D11 Odsek za molekularno biologijo in nanobiotehnologijo

Objave

Nazadnje posodobljeno dne 10.7.2018

2018

  1. GROM, Matic, KOZOROG, Mirijam, CASERMAN, Simon, POHAR, Andrej, LIKOZAR, Blaž. Protein A affinity chromatography of Chinese hamster ovary (CHO) cell culture broths containing biopharmaceutical monoclonal antibody (mAb): Experiments and mechanistic transport, binding and equilibrium modeling. Journal of Chromatography B Analytical Technologies in the Biomedical and Life Sciences. ISSN 1570-0232, Mar 2018, doi: 10.1016/j.jchromb.2018.02.032
  2. KOZOROG, Mirijam, SANI, Marc-Antonie, SEPAROVIC, Frances, ANDERLUH, Gregor. Listeriolysin O binding affects cholesterol and phospholipid acyl chain dynamics in fluid cholesterol-rich bilayers. Chem. Eur. J. 2018, doi: 10.1002/chem.201802575
  3. KOZOROG, Mirijam, SANI, Marc-Antonie, LENARČIČ ŽIVKOVIĆ, Martina, ILC, Gregor, HODNIK, Vesna, SEPAROVIC, Frances, PLAVEC, Janez, ANDERLUH, Gregor. 19F NMR studies provide insights into lipid membrane interactions of listeriolysin O, a pore forming toxin from Listeria monocytogenes. Scientific Reports, ISSN 2045-2322, May 2018, Vol 8: 6894, doi: 10.1038/s41598-018-24692-6
  4. NI, Tao, WILLIAMS, Sophie I, REZELJ, Saša, ANDERLUH, Gregor, HARLOS, Karl, STANSFELD, Phillip J, GILBERT, Robert J.C. Structures of monomeric and oligomeric forms of the Toxoplasma gondii perforin-like protein 1. Science Advances, Mar 2018, Vol. 4, doi: 10.1126/sciadv.aaq0762
  5. REZELJ, Saša, KOZOROG, Mirijam, ŠVIGELJ, Tomaž, POKLAR ULRIH, Nataša, ŽNIDARŠIČ, Nada, PODOBNIK, Marjetka, ANDERLUH, Gregor. Cholesterol enriched archaeosomes as a molecular system for studying interactions of cholesterol-dependent cytolysins with membranes. The journal of membrane biology, ISSN 0022-2631, 2018, doi: 10.1007/s00232-018-0018-y

 

2017

  1. BUTALA, Matej, NOVAK, Maruša, KRAŠEVEC, Nada, SKOČAJ, Matej, VERANIČ, Peter, MAČEK, Peter, SEPČIĆ, Kristina. Aegerolysins: lipid-binding proteins with versatile functions. Seminars in cell & developmental biology, ISSN 1084-9521, Dec 2017, vol. 72, doi: 10.1016/j.semcdb.2017.05.002
  2. GILBERT, Robert J., BAYLEY, Hagan, ANDERLUH, Gregor. Membrane pores : from structure and assembly, to medicine and technology. Philosophical transactions : Biological Sciences, ISSN 0962-8436, 5 Aug. 2017, vol. 372, doi: 10.1098/rstb.2016.0208
  3. KISOVEC, Matic, REZELJ, Saša, KNAP, Primož, CAJNKO, Miša Mojca, CASERMAN, Simon, FLAŠKER, Ajda, ŽNIDARŠIČ, Nada, REPIČ, Matej, MAVRI, Janez, RUAN, Yi, SCHEURING, Simon, PODOBNIK, Marjetka, ANDERLUH, Gregor. Engineering a pH responsive pore forming protein. Scientific reports, ISSN 2045-2322, Feb. 2017, doi: 10.1038/srep42231
  4. LENARČIČ, Tea, ALBERT, Isabell, BÖHM, Hannah, HODNIK, Vesna, PIRC, Katja, BEDINA ZAVEC, Apolonija, PODOBNIK, Marjetka, PAHOVNIK, David, ŽAGAR, Ema, PRUITT, Rory, GREIMEL, Peter, YAMAJI-HASEGAWA, Akiko, KOBAYASHI, Toshihide, ZIENKIEWICZ, Agnieszka, GÖMANN, Jasmin, MORTIMER, Jenny C., FANG, Lin, MAMODE-CASSIM, Adiilah, DELEU, Magali, LINS, Laurence, OECKING, Claudia, FEUSSNER, Ivo, MONGRAND, Sébastien, ANDERLUH, Gregor, NÜRNBERGER, Thorsten. Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins. Science, ISSN 0036-8075, Dec. 2017, vol. 358, doi: 10.1126/science.aan6874
  5. MAKINO, Asami, ABE, Mitsuhiro, ISHITSUKA, Reiko, MURATE, Motohide, KISHIMOTO, Takuma, SAKAI, Shota, HULLIN-MATSUDA, Francoise, SHIMADA, Yukiko, INABA, Takehiko, MIYATAKE, Hideyuki, TANAKA, Hideko, KURAHASHI, Atsushi, PACK, Chan-Gi, KASAI, Rinshi S., KUBO, Shuku, SCHIEBER, Nicole L., DOHMAE, Naoshi, TOCHIO, Naoya, HAGIWARA, Kyoji, SASAKI, Yutaka, AIDA, Yoko, FUJIMORI, Fumihiro, KIGAWA, Takanori, NISHIBORI, Kozo, PARTON, Robert G., KUSUMI, Akihiro, SAKO, Yasushi, ANDERLUH, Gregor, YAMASHITA, Makoto, KOBAYASHI, Tetsuyuki, GREIMEL, Peter, KOBAYASHI, Toshihide. A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C. The FASEB journal, ISSN 0892-6638, 2017, vol. 31, doi: 10.1096/fj.201500075R
  6. NI, Tao, KALLI, Antreas C., NAUGHTON, Fiona B., YATES, Luke A., NANEH, Omar, KOZOROG, Mirijam, ANDERLUH, Gregor, SANSOM, Mark S.P., GILBERT, Robert J. Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain. Biochemical journal, ISSN 0264-6021, Feb 2017, vol. 474, doi: 10.1042/BCJ20160791
  7. PODOBNIK, Marjetka, ANDERLUH, Gregor. Pore-forming toxins in Cnidaria. Seminars in cell & developmental biology, ISSN 1084-9521, Dec. 2017, doi: 10.1016/j.semcdb.2017.07.026
  8. PODOBNIK, Marjetka, KISOVEC, Matic, ANDERLUH, Gregor. Molecular mechanism of pore formation by aerolysin-like proteins. Philosophical transactions : Biological Sciences, ISSN 0962-8436, Aug 2017, vol. 372, doi: 10.1098/rstb.2016.0209
  9. REŽEN, Tadeja, HAFNER, Mateja, KORTAGERE, Sandhya, EKINS, Sean, HODNIK, Vesna, ROZMAN, Damjana. Rosuvastatin and atorvastatin are ligands of the human CAR/RXR[alpha] complex. Drug metabolism and disposition, ISSN 0090-9556, Aug. 2017, vol. 45, doi: 10.1124/dmd.117.075523
  10. ŠINK, Andreja. Gensko zdravljenje z virusnimi vektorji = Viral vectors in gene therapy. Farmacevtski vestnik : strokovno glasilo slovenske farmacije, ISSN 0014-8229, jul. 2017
  11. ŠTUKELJ, Roman, SCHARA, Karin, BEDINA ZAVEC, Apolonija, ŠUŠTAR, Vid, PAJNIČ, Manca, PAĐEN, Ljubiša, KREK, Judita Lea, KRALJ-IGLIČ, Veronika, MRVAR BREČKO, Anita, JANŠA, Rado. Effect of shear stress in the flow through the sampling needle on concentration of nanovesicles isolated from blood. European Journal of Pharmaceutical Sciences, ISSN 0928-0987, Feb. 2017, vol. 98, doi: 10.1016/j.ejps.2016.10.007
  12. VRIES, Ronald P. de, ANDERLUH, Gregor, KRAŠEVEC, Nada, SEPČIĆ, Kristina, et al. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome biology, ISSN 1474-760X, 2017, vol. 18, doi: 10.1186/s13059-017-1151-0

 

2016

  1. BEDINA ZAVEC, Apolonija, KRALJ-IGLIČ, Veronika, BRINC, Matjaž, FICKO TRČEK, Tanja, KUZMAN, Drago, SCHWEIGER, Ana, ANDERLUH, Gregor. Extracellular vesicles concentration is a promising and important parameter for industrial bioprocess monitoring. Biotechnology journal, 2016, vol. 11, doi: 10.1002/biot.201500049
  2. FAIS, Stefano, OʼDRISCOLL, Lorraine, BORRÀS, Francesc E., BUZAS, Edit I., CAMUSSI, Giovanni, CAPPELLO, Francesco, CARVALHO, Joana, SILVA, Anabela Cordeiro da, PORTILLO, Hernando del, EL ANDALOUSSI, Samir, FICKO, Tanja, KRALJ-IGLIČ, Veronika, BEDINA ZAVEC, Apolonija, et al. Evidence-based clinical use of nanoscale extracellular vesicles in nanomedicine. ACS nano, ISSN 1936-0851, 2016, doi: 10.1021/acsnano.5b08015
  3. FÜRTGES, Leon, CONRADT, David, SCHÄTZLE, Michael A., SINGH, Shailesh Kumar, KRAŠEVEC, Nada, LANIŠNIK-RIŽNER, Tea, MÜLLER, Michael, HUSAIN, Syed Masood. Phylogenetic studies, gene cluster analysis, and enzymatic reaction support anthrahydroquinone reduction as the physiological function of fungal 17β-hydroxysteroid dehydrogenase. ChemBioChem, ISSN 1439-7633, 2016, vol. 17,doi: 10.1002/cbic.201600489
  4. HEGGELUND, Julie Elisabeth, BURSCHOWSKY, Daniel, BJØRNESTAD, Victoria Ariel, HODNIK, Vesna, ANDERLUH, Gregor, KRENGEL, Ute. High-resolution crystal structures elucidate the molecular basis of cholera blood group dependence. PLOS pathogens, ISSN 1553-7374, Apr. 2016, vol. 12, no. 4, doi: 10.1371/journal.ppat.1005567
  5. KRAŠEVEC, Nada, BENČINA, Mojca. Fungi gene expression systems : applications and advancements. V: SCHMOLL, Monika (ur.). Gene expression systems in fungi : advancements and applications, (Fungal biology). Cham: Springer, cop. 2016, str. 201-226. doi: 10.1007/978-3-319-27951-0_8
  6. OBRADOVIĆ, Davor, GAŠPERŠIČ, Rok, CASERMAN, Simon, LEONARDI, Adrijana, JAMNIK, Maja, PODLESEK, Zdravko, SEME, Katja, ANDERLUH, Gregor, KRIŽAJ, Igor, MAČEK, Peter, BUTALA, Matej. A cytolethal distending toxin variant from Aggregatibacter actinomycetemcomitans with an aberrant CdtB that lacks the conserved catalytic histidine 160. PloS one, ISSN 1932-6203, 2016, vol. 11, iss. 7, str. 1-16, doi: 10.1371/journal.pone.0159231
  7. PODOBNIK, Marjetka, SAVORY, Peter, ROJKO, Nejc, KISOVEC, Matic, WOOD, Neil, HAMBLEY, Richard, PUGH, Jonathan, WALLACE, E. Jayne, MCNEILL, Luke, BRUCE, Mark, LIKO, Idlir, ALLISON, Timothy M., MEHMOOD, Shahid, YILMAZ, Neval, KOBAYASHI, Toshihide, GILBERT, Robert J., ROBINSON, Carol V., JAYASINGHE, Lakmal, ANDERLUH, Gregor. Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly. Nature communications, May 2016, vol. 7, doi: 10.1038/ncomms11598
  8. PODOBNIK, Marjetka, KRAŠEVEC, Nada, BEDINA ZAVEC, Apolonija, NANEH, Omar, FLAŠKER, Ajda, CASERMAN, Simon, HODNIK, Vesna, ANDERLUH, Gregor. How to study protein-protein interactions. Acta chimica slovenica, ISSN 1318-0207, 2016, vol. 63, doi: 10.17344/acsi.2016.2419
  9. PREVC, Ajda, BEDINA ZAVEC, Apolonija, ČEMAŽAR, Maja, KLOBOVES-PREVODNIK, Veronika, ŠTIMAC, Monika, TODOROVIĆ, Vesna, STROJAN, Primož, SERŠA, Gregor. Bystander effect induced by electroporation is possibly mediated by microvesicles and dependent on pulse amplitude, repetition frequency and cell type. The journal of membrane biology, ISSN 0022-2631, 2016, doi: 10.1007/s00232-016-9915-0
  10. RUAN, Yi, REZELJ, Saša, BEDINA ZAVEC, Apolonija, ANDERLUH, Gregor, SCHEURING, Simon. Listeriolysin O membrane damaging activity involves arc formation and lineaction -- implication for Listeria monocytogenes escape from phagocytic vacuole. PLOS pathogens, Apr. 2016, vol. 12, no. 4, doi: 10.1371/journal.ppat.1005597
  11. SKOČAJ, Matej, YU, Yang, GRUNDNER, Maja, RESNIK, Nataša, BEDINA ZAVEC, Apolonija, LEONARDI, Adrijana, KRIŽAJ, Igor, GUELLA, Graziano, MAČEK, Peter, ERDANI-KREFT, Mateja, FRANGEŽ, Robert, VERANIČ, Peter, SEPČIĆ, Kristina. Characterisation of plasmalemmal shedding of vesicles induced by the cholesterol/ sphingomyelin binding protein, ostreolysin A-mCherry. Biochimica et biophysica acta, Biomembranes, ISSN 0005-2736. [Print ed.], 2016, vol. , no. , doi: 10.1016/j.bbamem.2016.08.015
  12. WACKLIN, Hanna P., BAKRAČ, Biserka, MOULIN, Martina, ROJKO, Nejc, HAERTLEIN, Michael, FORSYTH, Trevor, ANDERLUH, Gregor, NORTON, Raymond S. Neutron reflection study of the interaction of the eukaryotic pore-forming actinoporin equinatoxin II with lipid membranes reveals intermediate states in pore formation. Biochimica et biophysica acta, Biomembranes, ISSN 0005-2736. , Apr. 2016, vol. 1858, iss. 4, str. 640-652, doi: 10.1016/j.bbamem.2015.12.019
  13. ZADRAVEC, Petra, MAREČKOVÁ, Lucie, PETROKOVÁ, Hana, HODNIK, Vesna, PERIŠIĆ, Milica, ANDERLUH, Gregor, ŠTRUKELJ, Borut, MALÝ, Petr, BERLEC, Aleš. Development of recombinant Lactococcus lactis displaying albumin-binding domain variants against Shiga toxin 1 B subunit. PloS one, ISSN 1932-6203, 2016, vol. 11, no. 9, doi: 10.1371/journal.pone.0162625

 

2015

  1. YÁÑEZ-MÓ, María, SILJANDER, Pia R.-M., ANDREU, Zoraida, BEDINA ZAVEC, Apolonija, BORRÀS, Francesc E., BUZAS, Edit I., BUZAS, Krisztina, CASAL, Enriqueta, CAPPELLO, Francesco, CARVALHO, Joana, KRALJ-IGLIČ, Veronika, MANČEK KEBER, Mateja, ŠTUKELJ, Roman, et al. Biological properties of extracellular vesicles and their physiological functions. Journal of extracellular vesicles, ISSN 2001-3078, doi: 10.3402/jev.v4.27066.
  2. BERNE, Sabina, KOVAČIČ, Lidija, SOVA, Matej, KRAŠEVEC, Nada, GOBEC, Stanislav, KRIŽAJ, Igor, KOMEL, Radovan. Benzoic acid derivatives with improved antifungal activity: design, synthesis, structure-activity relationship (SAR) and CYP53 docking studies. Bioorganic & Medicinal Chemistry, ISSN 0968-0896. [Print ed.], 2015, doi: 10.1016/j.bmc.2015.06.042.
  3. CAJNKO, Miša Mojca, MARUŠIČ, Maja, KISOVEC, Matic, ROJKO, Nejc, BENČINA, Mojca, CASERMAN, Simon, ANDERLUH, Gregor. Listeriolysin O affects the permeability of Caco-2 monolayer in a pore-dependent and Ca [sup] 2+-independent manner. PloS one, ISSN 1932-6203, Jun. 2015, vol. 10, iss. 6, e0130471. doi: 10.1371/journal.pone.0130471.
  4. ČEPIN, Marjeta, HRIBAR, Gorazd, CASERMAN, Simon, CRNJAK OREL, Zorica. Morphological impact of zinc oxide particles on the antibacterial activity and human epithelia toxicity. Materials science & engineering. C, Biomimetic materials, sensors and systems, ISSN 0928-4931. [Print ed.], Jul. 2015, vol. 52, doi: 10.1016/j.msec.2015.03.053.
  5. FELICIJAN, Mateja, NOVAK, Metka, KRAŠEVEC, Nada, URBANEK KRAJNC, Andreja. Antioxidant defences of Norway spruce bark against bark beetles and its associated blue-stain fungus. Agricultura, ISSN 1580-8432. [Print ed.], December 2015, vol. 12, no. 1-2, doi: 10.1515/agricultura-2016-0002
  6. MAKINO, Asami, ABE, Mitsuhiro, MURATE, Motohide, INABA, Takehiko, YILMAZ, Neval, HULLIN-MATSUDA, Francoise, KISHIMOTO, Takuma, SCHIEBER, Nicole L., TAGUCHI, Tomohiko, ARAI, Hiroyuki, ANDERLUH, Gregor, PARTON, Robert G., KOBAYASHI, Toshihide. Visualization of the heterogeneous membrane distribution of sphingomyelin associated with cytokinesis, cell polarity, and sphingolipidosis. The FASEB journal, ISSN 0892-6638, Feb. 2015, vol. 29, no. 2, doi: 10.1096/fj.13-247585.
  7. MATANGE, Nishad, PODOBNIK, Marjetka, VISWESWARIAH, Sandhya S. Metallophosphoesterases : structural fidelity with functional promiscuity. Biochemical journal, ISSN 0264-6021, 2015, vol. 467, doi: 10.1042/BJ20150028.
  8. METKAR, Sunil, MARCHIORETTO, Marta, ANTONINI, Valeria, LUNELLI, Lorenzo, WANG, Baikun, GILBERT, Robert J., ANDERLUH, Gregor, ROTH, R., POOGA, Margus, PARDO, Julian, HEUSER, J. E., DALLA SERRA, Mauro, FROELICH, Christopher J. Perforin oligomers form arcs in cellular membranes : a locus for intracellular delivery of granzymes. Cell death and differentiation, ISSN 1350-9047, Jan. 2015, vol. 22, iss. 1, doi: 10.1038/cdd.2014.110.
  9. MIKLAVIČ, Špela, KOGOVŠEK, Polona, HODNIK, Vesna, KOROŠEC, Jernej, KLADNIK, Aleš, ANDERLUH, Gregor, GUTIERREZ-AGUIRRE, Ion, MAČEK, Peter, BUTALA, Matej. The Pseudomonas aeruginosa RhlR-controlled aegerolysin RahU is a low-affinity rhamnolipid-binding protein. FEMS microbiology letters, ISSN 0378-1097. [Print ed.], 2015, doi: 10.1093/femsle/fnv069.
  10. NANEH, Omar, BEDINA ZAVEC, Apolonija, PAHOVNIK, David, ŽAGAR, Ema, GILBERT, Robert J., KRIŽAJ, Igor, ANDERLUH, Gregor. An optimized protocol for expression and purification of murine perforin in insect cells. Journal of Immunological Methods, ISSN 0022-1759. [Print ed.], 2015, doi: 10.1016/j.jim.2015.07.007.
  11. NOVAK, Maruša, KRAŠEVEC, Nada, SKOČAJ, Matej, MAČEK, Peter, ANDERLUH, Gregor, SEPČIĆ, Kristina. Fungal aegerolysin-like proteins : distribution, activities, and applications. Applied microbiology and biotechnology, ISSN 0175-7598, Jan. 2015, vol. 99, iss. 2, doi: 10.1007/s00253-014-6239-9.
  12. PODOBNIK, Marjetka, MARCHIORETTO, Marta, ZANETTI, Manuela, BAVDEK, Andrej, KISOVEC, Matic, CAJNKO, Miša Mojca, LUNELLI, Lorenzo, DALLA SERRA, Mauro, ANDERLUH, Gregor. Plasticity of listeriolysin O pores and its regulation by pH and unique histidine. Scientific reports, ISSN 2045-2322, Apr. 2015, vol. 5, str. 1-10, ilustr. doi: 10.1038/srep09623.
  13. ROJKO, Nejc, ANDERLUH, Gregor. How lipid membranes affect pore forming toxin activity. Accounts of chemical research, ISSN 0001-4842. [Print ed.], Dec. 2015, vol. 48, iss. 12, str. 3073-3079. doi: 10.1021/acs.accounts.5b00403.
  14. WEBER, Daniel K., YAO, Shenggen, ROJKO, Nejc, ANDERLUH, Gregor, LYBRAND, Terry P., DOWNTON, Matthew T., WAGNER, John, SEPAROVIC, Frances. Characterization of the Lipid-Binding Site of Equinatoxin II by NMR and Molecular Dynamics Simulation. Biophysical journal, Apr. 2015, vol. 108, iss. 8, str. 1987-1996. doi: 10.1016/j.bpj.2015.03.024

 

2014

  1. ALIBEGOVIĆ, Armin, BALAŽIC, Jože, PETROVIČ, Danijel, HRIBAR, Gorazd, BLAGUS, Rok, DROBNIČ, Matej. Viability of human articular chondrocytes harvested postmortem : changes with time and temperature of in vitro culture conditions. Journal of forensic sciences, ISSN 0022-1198, Mar. 2014, vol. 58, iss. 3, str. 325-332, ilustr, doi: 10.1111/1556-4029.12330.
  2. ANDERLUH, Gregor, KISOVEC, Matic, KRAŠEVEC, Nada, GILBERT, Robert J. Distribution of MACPF/CDC proteins. V: ANDERLUH, Gregor (ur.), GILBERT, Robert J. (ur.). MACPF/CDC proteins - agents of defence, attack and invasion, (Subcellular biochemistry, ISSN 0306-0225, vol. 80). Dordrecht: Springer, cop. 2014, str. 7-30, doi: 10.1007/978-94-017-8881-6_2.
  3. Baker MA, Rojko N, Cronin B, Anderluh G, Wallace MI. Photobleaching reveals heterogeneous stoichiometry for equinatoxin II oligomers. ChemBioChem, vol. 15, no. 14, str. 2139–2145, September 2014, doi: 10.1002/cbic.201300799
  4. BEDINA ZAVEC, Apolonija, OTA, Ajda, ZUPANČIČ, Tina, KOMEL, Radovan, POKLAR ULRIH, Nataša, LIOVIĆ, Mirjana. Archaeosomes can efficiently deliver different types of cargo into epithelial cells grown in vitro. Journal of biotechnology, ISSN 0168-1656. [Print ed.], 2014, doi: 10.1016/j.jbiotec.2014.09.015.
  5. CAJNKO, Miša Mojca, MIKELJ, Miha, TURK, Tom, PODOBNIK, Marjetka, ANDERLUH, Gregor. Membrane interactions and cellular effects of MACPF/CDC proteins. V: ANDERLUH, Gregor (ur.), GILBERT, Robert J. (ur.). MACPF/CDC proteins - agents of defence, attack and invasion, (Subcellular biochemistry, ISSN 0306-0225, vol. 80). Dordrecht: Springer, cop. 2014, str. 119-144, doi: 10.1007/978-94-017-8881-6_7.
  6. CONDON, Bradford J., WU, Dongliang, KRAŠEVEC, Nada, HORWITZ, Benjamin A., TURGEON, B. Gillian. Comparative genomics of Cochliobolus phytopathogens. V: DEAN, Ralph A. (ur.). Genomics of plant-associated fungi : monocot pathogens. Berlin; Heidelberg: Springer, cop. 2014, str. 41-67, ilustr., doi: 10.1007/978-3-662-44053-7_2.
  7. Gilbert RJC, Dalla Serra M, Froelich CJ, Wallace MI, ANDERLUH G. Membrane pore formation at protein–lipid interfaces. Trends in Biochemichal Sciences, 2014, 39(11), str. 510-516. doi: http://dx.doi.org/10.1016/j.tibs.2014.09.002
  8. GODINIĆ MIKULČIĆ, Vlatka, JARIĆ, Jelena, GREBER, Basil J., FRANKE, Vedran, HODNIK, Vesna, ANDERLUH, Gregor, BAN, Nenad, WEYGAND-DURAŠEVIĆ, Ivana. Archaeal aminoacyl-tRNA synthetases interact with the ribosome to recycle tRNAs. Nucleic acids research, ISSN 0305-1048, Apr. 2014, vol. 42, no. 8, str. 5191-5201, doi: 10.1093/nar/gku164.
  9. GUTIERREZ-AGUIRRE, Ion, HODNIK, Vesna, GLAIS, Laurent, RUPAR, Matevž, JACQUOT, Emmanuel, ANDERLUH, Gregor, RAVNIKAR, Maja. Surface plasmon resonance for monitoring the interaction of Potato virus Y with monoclonal antibodies. Analytical biochemistry, ISSN 0003-2697, Feb. 15. 2014, vol. 447, str. 74-81, doi: 10.1016/j.ab.2013.10.032.
  10. Hudler P, Kocevar N, KOMEL R. Proteomic approaches in biomarker discovery: new perspectives in cancer diagnostics. The Scientific World Journal, Januar 2014, doi:  10.1155/2014/260348
  11. JALEN, Špela, SMILOVIĆ, Vanja, FIDLER, Katarina, PODOBNIK, Barbara, MARUŠIĆ, Maja, KOMEL, Radovan, GABERC-POREKAR, Vladka, JEVŠEVAR, Simona. New assay for quantification of PEGylated proteins during in vitro permeability studies. Acta chimica slovenica, ISSN 1318-0207. [Tiskana izd.], 2014, vol. 61, no. 3, str. 615-622
  12. JAWALLAPERSAND, Poojah, MASHELE, Samson Sitheni, KOVAČIČ, Lidija, STOJAN, Jure, KOMEL, Radovan, BABU, Suresh P., KRAŠEVEC, Nada, SYED, Khajamohiddin. Cytochrome P450 monooxygenase CYP53 family in fungi : comparative structural and evolutionary analysis and its role as a common alternative anti-fungal drug target. PloS one, ISSN 1932-6203, Sep. 2014, vol. 9, iss. 9, str. 1-15, e107209, doi: 10.1371/journal.pone.0107209.
  13. KOČEVAR, Nina, FRKOVIĆ-GRAZIO, Snježana, KOMEL, Radovan. Two-dimensional gel electrophoresis of gastric tissue in an alkaline pH range. Proteomics, ISSN 1615-9853. [Print ed.], 2014, vol. 14, iss. 2/3, str. 311-321, doi: 10.1002/pmic.201200574.
  14. KOROŠEC, Branka, SOVA, Matej, TURK, Samo, KRAŠEVEC, Nada, NOVAK, Metka, LAH, Ljerka, STOJAN, Jure, PODOBNIK, Barbara, BERNE, Sabina, ZUPANEC, Neja, BUNC, Marko, GOBEC, Stanislav, KOMEL, Radovan. Antifungal activity of cinnamic acid derivatives involves inhibition of benzoate 4-hydroxylase (CYP53). Journal of applied microbiology, ISSN 1364-5072, Apr. 2014, iss. 4, vol. 116, str. 955-966, ilustr., doi: 10.1111/jam.1241.
  15. Kostan J, Salzer U, Orlova A, Törö I, Hodnik V, Senju Y, Zou J, Schreiner C, Steiner J, Meriläinen J, Nikki M, Virtanen I, Carugo O, Rappsilber J, Lappalainen P, Lehto VP, Anderluh G, Egelman EH, Djinović-Carugo K. Direct interaction of actin filaments with F-BAR protein pacsin2. EMBO reports, August 2014 doi: 10.15252/embr.201439267
  16. KRAŠEVEC, Nada, MILUNOVIĆ, Tatjana, ANŽUR-LASNIK, Marija, LUKANČIČ, Irena, KOMEL, Radovan, GABERC-POREKAR, Vladka. Human granulocyte colony stimulating factor (G-CSF) produced in the filamentous fungus Aspergillus niger. Acta chimica slovenica, ISSN 1318-0207. [Tiskana izd.], 2014, vol. 61, no. 4, str. 709-717.
  17. LAZAR, Ana, COLL RIUS, Anna, DOBNIK, David, BAEBLER, Špela, BEDINA ZAVEC, Apolonija, ŽEL, Jana, GRUDEN, Kristina. Involvement of potato (Solanum tuberosum L.) MKK6 in response to Potato virus Y. PloS one, ISSN 1932-6203, Aug. 2014, vol. 9, iss. 8., doi: 10.1371/journal.pone.0104553
  18. MATANGE, Nishad, PODOBNIK, Marjetka, VISWESWARIAH, Sandhya S. The non-catalytic 'cap domain' of a mycobacterial metallophosphoesterase regulates its expression and localization in the cell. The Journal of biological chemistry, ISSN 0021-9258, Aug. 2014, vol. 289, iss. 32, str. 22470-22481, doi: 10.1074/jbc.M114.578328.
  19. MARUŠIĆ, Maja, DJURDJEVIČ, Ida, DRAŠLAR, Kazimir, CASERMAN, Simon. Calu-3 model under AIC and LCC conditions and application for protein permeability studies. Acta chimica slovenica, ISSN 1318-0207. [Tiskana izd.], 2014, vol. 61, no. 1, str. 100-109. http://acta.chem-soc.si/61/61-1-100.pdf.
  20. NANEH, Omar, AVČIN, Tadej, BEDINA ZAVEC, Apolonija. Perforin and human diseases. V: ANDERLUH, Gregor (ur.), GILBERT, Robert J. (ur.). MACPF/CDC proteins - agents of defence, attack and invasion, (Subcellular biochemistry, ISSN 0306-0225, vol. 80). Dordrecht: Springer, cop. 2014, str. 221-239, doi: 10.1007/978-94-017-8881-6_11.
  21. NOVAK, Metka, URBANEK KRAJNC, Andreja, LAH, Ljerka, ZUPANEC, Neja, KRAŠEVEC, Nada, KRIŽMAN, Mitja, BOHLMANN, Joerg, KOMEL, Radovan. Low-density Ceratocystis polonica inoculation of Norway spruce (Picea abies) triggers accumulation of monoterpenes with antifungal properties. European journal of forest research (Print), ISSN 1612-4669, Jul. 2014, vol. 133, no. 4, str. 573-583, ilustr., doi: 10.1007/s10342-013-0772-4.
  22. PODOBNIK, Marjetka, SIDDIQUI, Nida, REBOLJ, Katja, NAMBI, Subhalaxmi, MERZEL, Franci, VISWESWARIAH, Sandhya S. Allostery and conformational dynamics in cAMP-binding acyltransferases. The Journal of biological chemistry, ISSN 0021-9258, Jun. 2014, vol. 289, iss. 23, str. 1588-16600, doi: 10.1074/jbc.M114.560086.
  23. ROJKO, Nejc, CRONIN, Bríd, DANIAL, J. S. H, BAKER, M. A. B., ANDERLUH, Gregor, WALLACE, Mark I. Imaging the lipid-phase-dependent pore formation of Equinatoxin II in droplet interface bilayers. Biophysical journal, ISSN 0006-3495, Apr. 2014, vol. 106, iss. 8, str. 1630-1637, doi: 10.1016/j.bpj.2013.11.4507.
  24. SKOČAJ, Matej, RESNIK, Nataša, GRUNDNER, Maja, OTA, Katja, ROJKO, Nejc, HODNIK, Vesna, ANDERLUH, Gregor, SOBOTA, Andrzej, MAČEK, Peter, VERANIČ, Peter, SEPČIĆ, Kristina. Tracking cholesterol/sphingomyelin-rich membrane domains with the ostreolysin A-mCherry protein. PloS one, ISSN 1932-6203, Mar. 2014, vol. 9, iss. 3, str. 1-12, ilustr., doi: 10.1371/journal.pone.0092783.
  25. STRMECKI, Lana, HUDLER, Petra, BENEDIK-DOLNIČAR, Majda, KOMEL, Radovan. De novo mutation in DMD gene in a patient with combined hemophilia A and Duchenne muscular dystrophy. International journal of hematology, ISSN 0925-5710, Feb. 2014, vol. 99, iss. 2, str. 184-187, doi: 10.1007/s12185-013-1488-4.
  26. SYED, Khajamohiddin, SHALE, Karabo, NAZIR, K. H. M. Nazmul Hussain, KRAŠEVEC, Nada, MASHELE, Samson Sitheni, PAGADALA, Nataraj Sekhar. Genome-wide identification, annotation and characterization of novel thermostable cytochrome P450 monooxygenases from the thermophilic biomass-degrading fungi Thielavia terrestris and Myceliophthora thermophila. Genes and genomics, ISSN 1976-9571, 2014, vol. 36, issue 3, str. 321-333, doi: 10.1007/s13258-013-0170-9.
  27. URBANEK KRAJNC, Andreja, NOVAK, Metka, FELICIJAN, Mateja, KRAŠEVEC, Nada, LEŠNIK, Mario, ZUPANEC, Neja, KOMEL, Radovan. Antioxidative response patterns of Norway spruce bark to low-density Ceratocystis polonica inoculation. Trees, ISSN 0931-1890, 2014, vol. 28, iss. 4, str. 1145-1160, doi: 10.1007/s00468-014-1025-y.
  28. WALTER, Beata, RUPNIK, Maja, HODNIK, Vesna, ANDERLUH, Gregor, DUPUY, Bruno, PAULIČ, Nejc, ŽGUR-BERTOK, Darja, BUTALA, Matej. The LexA regulated genes of the Clostridium difficile. BMC microbiology, ISSN 1471-2180, 2014, vol. 14, no. 88, str. 1-20, doi: 10.1186/1471-2180-14-88.
  29. ZUPANČIČ, Tina, STOJAN, Jure, LANE, Ellen Birgitte, KOMEL, Radovan, BEDINA ZAVEC, Apolonija, LIOVIĆ, Mirjana. Intestinal cell barrier function in vitro is severely compromised by keratin 8 and 18 mutations identified in patients with inflammatory bowel disease. PloS one, ISSN 1932-6203, Jun. 2014, vol. 9, iss. 6, doi: 10.1371/journal.pone.0099398.

2013

  1. BEDINA ZAVEC, Apolonija. Intrinsically disoredered proteins in replication process. V: STUART, David (ur.). The mechanisms of DNA replication. Rijeka: InTech, 2013, str. 169-189, doi: 10.5772/51673.
  2. ČRNIGOJ, Miha, PODLESEK, Zdravko, ZORKO, Mateja, JERALA, Roman, ANDERLUH, Gregor, POKLAR ULRIH, Nataša. Interactions of archaeal chromatin proteins Alba1 and Alba2 with nucleic acids. PloS one, 2013, vol. 8, no. 2, str. 1-12, doi: 10.1371/journal.pone.0058237.
  3. GILBERT, Robert J., MIKELJ, Miha, DALLA SERRA, Mauro, FROELICH, Christopher J., ANDERLUH, Gregor. Effects of MACPF/CDC proteins on lipid membranes. Cell Mol Life Sci (Print. ed.), 2013, vol. 70, issue 12, str. 2083-2098, doi: 10.1007/s00018-012-1153-8.
  4. HODNIK, Vesna, ANDERLUH, Gregor. Surface plasmon resonance for measuring interactions of proteins with lipid membranes. V: KLEINSCHMIDT, Jörg H. (ur.). Lipid-protein interactions : methods and protocols, (Methods in molecular biology (Clifton, N.J.), 974), (Methods in molecular biology (Clifton, N.J. Online), 974), (Springer protocols). New York [etc.]: Humana Press, cop. 2013, str. 23-36, doi: 10.1007/978-1-62703-275-9_2
  5. OTA, Katja, LEONARDI, Adrijana, MIKELJ, Miha, SKOČAJ, Matej, WOHLSCHLAGER, Therese, KÜNZLER, Markus, AEBI, Markus, NARAT, Mojca, KRIŽAJ, Igor, ANDERLUH, Gregor, SEPČIĆ, Kristina, MAČEK, Peter. Membrane cholesterol and sphingomyelin, and ostreolysin A are obligatory for pore-formation by a MACPF/CDC-like pore-forming protein, pleurotolysin B. Biochimie, ISSN 0300-9084, 2013, vol. 95, iss. 10, str. 1855-1864, doi: 10.1016/j.biochi.2013.06.012.
  6. KASTELIC, Damjana, SOLER, Nicolas, KOMEL, Radovan, POMPON, Denis. The Global Sequence Signature algorithm unveils a structural network surrounding heavy chain CDR3 Loop in Camelidae variable domains. Biochim. biophys. acta (G). [Print ed.], 2013, vol. 1830, issue 6, str. 3373-3381, ilustr., doi: 10.1016/j.bbagen.2013.02.014.
  7. KOČEVAR, Nina, HUDLER, Petra, KOMEL, Radovan. The progress of proteomic approaches in searching for cancer biomarkers. New biotechnology, 2013, vol. 30, iss. 3, str. 319-326, doi: 10.1016/j.nbt.2012.11.011.
  8. KOVAČIČ, Lidija, PAULIČ, Nejc, LEONARDI, Adrijana, HODNIK, Vesna, ANDERLUH, Gregor, PODLESEK, Zdravko, ŽGUR-BERTOK, Darja, KRIŽAJ, Igor, BUTALA, Matej. Structural insight into LexARecA interaction. Nucleic acids research, ISSN 0305-1048, 2013, vol. 42, issue 21, str. 9901-9910, doi: 10.1093/nar/gkt744.
  9. KUNSTELJ, Menči, FIDLER, Katarina, ŠKRAJNAR, Špela, KENIG, Maja, SMILOVIĆ, Vanja, KUSTERLE, Mateja, CASERMAN, Simon, ZORE, Irena, GABERC-POREKAR, Vladka, JEVŠEVAR, Simona. Cysteine-specific PEGylation of rhG-CSF via selenylsulfide bond. Bioconjug. chem., 2013, vol. , no. , str., doi: 10.1021/bc3005232.
  10. LAH, Ljerka, HARIDAS, Sajeet, BOHLMANN, Joerg, BREUIL, Colette. The cytochromes P450 of Grosmannia clavigera : genome organization, phylogeny, and expression in response to pine host chemicals. Fungal genet. biol. (Print), 2013, vol. 50, str. 72-81, ilustr., doi: 10.1016/j.fgb.2012.10.002.
  11. LAVENTIE, Benoît-Joseph, ANDERLUH, Gregor. Para-sulfonato-calix[n]arenes inhibit staphylococcal bicomponent leukotoxins by supramolecular interactions. Biochem. j. (Lond., 1984), 2013, vol. 450, part 3, str. 559-571, doi: 10.1042/BJ20121628
  12. MARCHIORETTO, Marta, PODOBNIK, Marjetka, DALLA SERRA, Mauro, ANDERLUH, Gregor. What planar lipid membranes tell us about the pore-forming activity of cholesterol-dependent cytolysins. Biophysical Chemistry, 2013, doi: 10.1016/j.bpc.2013.06.015.
  13. MARUŠIĆ, Maja, ZUPANČIČ, Tina, HRIBAR, Gorazd, KOMEL, Radovan, ANDERLUH, Gregor, CASERMAN, Simon. The Caco-2 cell culture model enables sensitive detection of enhanced protein permeability in the presence of N-decyl-[beta]-d-maltopyranoside. New biotechnology, 25 Jun. 2013, vol. 30, iss. 5, str. 507-515, ilustr., doi: 10.1016/j.nbt.2013.05.008.
  14. MIKELJ, Miha, PRAPER, Tilen, DEMIČ, Rok, HODNIK, Vesna, TURK, Tom, ANDERLUH, Gregor. Electroformation of giant unilamellar vesicles from erythrocyte membranes under low-salt conditions. Analytical biochemistry, ISSN 0003-2697, Apr. 2013, vol. 435, iss. 2, str. 174-180., doi: 10.1016/j.ab.2013.01.001.
  15. NOVAK, Metka, URBANEK KRAJNC, Andreja, LAH, Ljerka, ZUPANEC, Neja, KRAŠEVEC, Nada, KRIŽMAN, Mitja, BOHLMANN, Joerg, KOMEL, Radovan. Low-density Ceratocystis polonica inoculation of Norway spruce (Picea abies) triggers accumulation of monoterpenes with antifungal properties. European journal of forest research (Print), ISSN 1612-4669, 2013, vol. , no. , str., ilustr., doi: 10.1007/s10342-013-0772-4.
  16. OGOREVC, Eva, ŠTUKELJ, Roman, BEDINA ZAVEC, Apolonija, ŠUŠTAR, Vid, ŠIMUNDIĆ, Metka, KRALJ-IGLIČ, Veronika, JANŠA, Rado. A 32-month follow-up study of nanovesicle concentrations in blood from 12 patients with gastrointestinal stromal tumour treated with imatinib. Biochem Soc Trans, Feb. 2013, vol. 41, no. 1, str. 303-308, ilustr., doi: 10.1042/BST20120247.
  17. OTA, Katja, LEONARDI, Adrijana, MIKELJ, Miha, SKOČAJ, Matej, WOHLSCHLAGER, Therese, KÜNZLER, Markus, AEBI, Markus, NARAT, Mojca, KRIŽAJ, Igor, ANDERLUH, Gregor, SEPČIĆ, Kristina, MAČEK, Peter. Membrane cholesterol and sphingomyelin, and ostreolysin A are obligatory for pore-formation by a MACPF/CDC-like pore-forming protein, pleurotolysin B. Biochimie, ISSN 0300-9084, 2013, vol. 95, iss. 10, str. 1855-1864, doi: 10.1016/j.biochi.2013.06.012.
  18. PACCEZ, Juliano D., VOGELSANG, Matjaž, PARKER, M. Iqbal, ZERBINI, Luiz F. The receptor tyrosine kinase Axl in cancer : biological functions and therapeutic implication. Int J Cancer. [Tiskana izd.], 2013, str. 1-41, doi: 10.1002/ijc.28246.
  19. PETERNEL, Špela. Bacterial cell disruption : a crucial step in protein production. New biotechnology, ISSN 1871-6784, 2013, vol. 30, issue 2, str. 250-254, doi: 10.1016/j.nbt.2011.09.005.
  20. ROJKO, Nejc, KRISTAN, Katarina, VIERO, Gabriella, ŽEROVNIK, Eva, MAČEK, Peter, DALLA SERRA, Mauro, ANDERLUH, Gregor. Membrane damage by an [alpha]-helical pore forming protein Equinatoxin II proceeds through succesion of ordered steps. The Journal of biological chemistry, ISSN 0021-9258, 2013, vol. 288, issue 33, 23704-23715, ilustr., doi: 10.1074/jbc.M113.481572
  21. SKOČAJ, Matej, BAKRAČ, Biserka, KRIŽAJ, Igor, MAČEK, Peter, ANDERLUH, Gregor, SEPČIĆ, Kristina. The sensing of membrane microdomains based on pore-forming toxins. Curr. med. chem., 2013, vol. 20, no. 4, str. 491-501, doi: 10.2174/092986713804910094.
  22. ŠVAJGER, Urban, BRUS, Boris, TURK, Samo, SOVA, Matej, HODNIK, Vesna, ANDERLUH, Gregor, GOBEC, Stanislav. Novel toll-like receptor 4 (TLR4) antagonists identified by structure- and ligand-based virtual screening. European Journal of Medicinal Chemistry, ISSN 0223-5234. [Print ed.], Dec. 2013, vol. 70, str. 393-399., doi: 10.1016/j.ejmech.2013.10.019.
  23. TLUČKOVÁ, Katarína, MARUŠIČ, Maja, TÓTHOVÁ, Petra, BAUER, Lubos, ŠKET, Primož, PLAVEC, Janez, VIGLASKY, Viktor. Human papillomavirus G-quadruplexes. Biochemistry, ISSN 0006-2960. [Print ed.], Oct. 2013, vol. 52, no. 41, str. 7207-7216.
  24. VOGELSANG, Matjaž. (ured.). DNA alterations in Lynch Syndrome: Advances in molecular diagnosis and genetic counselling, 2013, New York: Springer, doi: 10.1007/978-94-007-6597-9
  25. WANG, Yabing, VOGELSANG, Matjaž, SCHÄFER, Georgia, MATEJCIC, Marco, PARKER, M. Iqbal. MicroRNA polymorphisms and environmental smoke exposure as risk factors for oesophageal squamous cell carcinoma. PloS one, ISSN 1932-6203, Oct. 2013, vol. 8, iss. 10, str. 1-9, e78520., doi: 10.1371/journal.pone.0078520.

2012

  1. ANDERLUH, Gregor, ŽEROVNIK, Eva. (2012) Pore formation by human stefin B in its native and oligomeric states and the consequent amyloid induced toxicity. Front. mol. neurosci., vol. 5, str. 1-8.
  2. ANKO, Maja, MAJHENC, Janja, KOGEJ, Ksenija, SILLARD, Rannard, LANGEL, Ülo, ANDERLUH, Gregor, ZORKO, Matjaž. (2012) Influence of stearyl and trifluoromethylquinoline modifications of the cell penetrating peptide TP10 on its interaction with a lipid membrane. Biochim. biophys. acta, Biomembr., vol. 1818, iss. 3, str. 915-924.
  3. BAVDEK, Andrej, KOSTANJŠEK, Rok, ANTONINI, Valeria, LAKEY, Jeremy H., DALLA SERRA, Mauro, GILBERT, Robert J., ANDERLUH, Gregor. (2012) pH dependence of listeriolysin O aggregation and pore-forming ability. FEBS Journal, vol. 279, iss. 1, str. 126-141.
  4. BERNE S, PODOBNIK B, ZUPANEC N, NOVAK M, KRAŠEVEC N, TURK S, KOROŠEC B, LAH L, ŠULIGOJ E, STOJAN J, GOBEC S, KOMEL R. (2012) Virtual screening yields inhibitors of novel antifungal drug target, benzoate 4-monooxygenase. J Chem Inf Model. 52(11):3053-63.
  5. BRVAR, Matjaž, PERDIH, Andrej, HODNIK, Vesna, RENKO, Miha, ANDERLUH, Gregor, JERALA, Roman, ŠOLMAJER, Tomaž. (2012) In silico discovery and biophysical evaluation of novel 5-(2-hydroxybenzylidene) rhodanine inhibitors of DNA gyrase B. Bioorg. med. chem., vol. 20, iss. 8, str. 2572-2580.
  6. BRVAR, Matjaž, PERDIH, Andrej, RENKO, Miha, ANDERLUH, Gregor, TURK, Dušan, ŠOLMAJER, Tomaž. (2012) Structure-based discovery of substituted 4, 5`-bithiazoles as novel DNA gyrase inhibitors. J. Med. Chem., vol. 55, issue 14, str. 6413-6426.
  7. CONRADO, Robert J., LEBAR, Tina, TURNŠEK, Jernej, TOMŠIČ, Nejc, AVBELJ, Monika, GABER, Rok, KOPRIVNJAK, Tomaž, MORI, Jerneja, GLAVNIK, Vesna, VOVK, Irena, BENČINA, Mojca, HODNIK, Vesna, ANDERLUH, Gregor, JERALA, Roman. (2012) DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic acids res., vol. 40, no. 4, str. 1879-1889.
  8. DE COLIBUS, Luigi, SONNEN, Andreas F.- P., MORRIS, Keith J., SIEBERT, C. Alistair, ABRUSCI, Patrizia, PLITZKO, Jürgen, HODNIK, Vesna, LEIPPE, Matthias, VOLPI, Emanuela, ANDERLUH, Gregor, GILBERT, Robert J. (2012) Structures of lysenin reveal a shared evolutionary origin for pore-forming proteins and its mode of sphingomyelin recognition. Structure (Lond.), vol. 20, issue 9, str. 1498-1507.
  9. KAHN SA, BIASOLI D, GARCIA C, GERALDO LH, PONTES B, SOBRINHO M, FRAUCHES AC, ROMAO L, SOLETTI RC, ASSUNCAO FDOS S, TOVAR-MOLL F, DE SOUZA JM, LIMA FR, ANDERLUH G, MOURA-NETO V. (2012) Equinatoxin II potentiates temozolomide- and etoposide-induced glioblastoma cell death. Curr Top Med Chem, 12(9):2082-93.
  10. KOČEVAR, Nina, ODREMAN MACCHIOLI, Federico, VINDIGNI, Alessandro, FRKOVIĆ-GRAZIO, Snježana, KOMEL, Radovan. (2012) Proteomic analysis of gastric cancer and immunoblot validation of potential biomarkers. World J. Gastroenterol., Mar. 2012, vol. 18, iss. 11, str. 1216-1228.
  11. KOČEVAR N, HUDLER P, KOMEL R. (2012) The progress of proteomic approaches in searching for cancer biomarkers. N Biotechnol. doi:pii: S1871-6784(12)00868-0. 10.1016/j.nbt.2012.11.011
  12. LIOVIĆ, Mirjana, OZIR, Mateja, BEDINA ZAVEC, Apolonija, PETERNEL, Špela, KOMEL, Radovan, ZUPANČIČ, Tina. (2012) Inclusion bodies as potential vehicles for recombinant protein delivery into epithelial cells. Microb Cell Fact, vol. 11, iss. 1, str. [1-14].
  13. MATTIAZZI, Mojca, SUN, Yidi, WOLINSKI, Heimo, BAVDEK, Andrej, PETAN, Toni, ANDERLUH, Gregor, KOHLWEIN, Sepp D., DRUBIN, David, KRIŽAJ, Igor, PETROVIČ, Uroš. (2012) A neurotoxic phospholipase A [sub] 2 impairs yeast amphiphysin activity and reduces endocytosis. PloS one, vol. 7, iss. 7, str. 1-13
  14. MILUNOVIĆ, Tatjana, KUNSTELJ, Menči, FIDLER, Katarina, ANDERLUH, Gregor, GABERC-POREKAR, Vladka. (2012) Coupling purification and on-column PEGylation of TNF-[alfa] analogue. Anal. biochem., str. [1-9].
  15. POPOVIĆ, Matija, ZLATEV, Ventsislav, HODNIK, Vesna, ANDERLUH, Gregor, FELLI, Isabella C., PONGOR, Sándor, PINTAR, Alessandro. (2012) Flexibility of the PDZ-binding motif in the micelle-bound form of Jagged-1  cytoplasmic tail. Biochim. biophys. acta, Biomembr., vol. 1818, iss. 7, str. 1706-1716.
  16. ŠKEDELJ, Veronika, ARSOVSKA, Emilija, TOMAŠIĆ, Tihomir, KROFLIČ, Ana, HODNIK, Vesna, HRAST, Martina, BEŠTER-ROGAČ, Marija, ANDERLUH, Gregor, GOBEC, Stanislav, BOSTOCK, Julieanne M., CHOPRA, Ian, O'NEILL, Alex, RANDALL, Christopher, ZEGA, Anamarija. (2012)
    6-arylpyrido[2,3-d]pyrimidines as novel ATP-competitive inhibitors of bacterial D-alanine: D-alanine ligase. PloS one, vol. 7, no. 8, str. e39922.
  17. VOGELSANG, Matjaž, WANG, Yabing, VEBER, Nika, MWAPAGHA, Lamech M., IQBAL PARKER, M. (2012) The cumulative effects of polymorphisms in the DNA mismatch repair genes and tobacco smoking in oesophageal cancer risk. PloS one, vol. 7, iss. 5, str. e36962-1-e36962-10.
  18. YACHI, Rieko, UCHIDA, Yasunori, BALAKRISHNA, Bhat Hema, ANDERLUH, Gregor, KOBAYASHI, Toshihide, TAGUCHI, Tomohiko, ARAI, Hiroyuki. (2012) Subcellular localization of sphingomyelin revealed by two toxin-based probes in mammalian cells. Genes cells (Online), , vol. 17, iss. 8, str. 720-727.
  19. ZUPANČIČ, Tina, OZIR, Mateja, TÖRMÄ, Hans, KOMEL, Radovan, LIOVIĆ, Mirjana. Keratinocyte-based cell assays : their potential pitfalls. Archives for dermatological research, ISSN 0340-3696, 2012, vol. 304, iss. 9, str. 765-768

2011

  1. ABRAHAMS, Jan-Pieter, APWEILER, Rolf, BALLING, Rudi, PODOBNIK, Marjetka (2011) 4D biology for health and disease : workshop report. New biotechnology 28, 4, 291-293.
  2. DERMOL, Urška, JANARDAN, Vishnu, TYAGI, Richa, VISWESWARIAH, Sandhya S., PODOBNIK, Marjetka (2011) Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome. J. Mol. Biol. 412, 481-494.
  3. FIDLER, Katarina, JEVŠEVAR, Simona, MILUNOVIĆ, Tatjana, ŠKRAJNAR, Špela, PREMZL, Aleš, KUNSTELJ, Menči, ZORE, Irena, PODOBNIK, Barbara, KUSTERLE, Mateja, CASERMAN, Simon, KENIG, Maja, SMILOVIĆ, Vanja, GABERC-POREKAR, Vladka (2011) The characterization and potential use of G-CSF dimers and their pegylated conjugates. Acta chim. slov. 58, 1, 1-8.
  4. HRIBAR, Gorazd, ŽNIDARŠIČ, Andrej, BELE, Marjan, MAVER, Uroš, CASERMAN, Simon, GABERŠČEK, Miran, GABERC-POREKAR, Vladka (2011) Zinc-phosphate nanoparticles with reversibly attached TNF- [alfa] analogs : an interesting concept for potential use in active immunotherapy. J. Nanopart. Res. 13, 3019-3032.
  5. LAH, Ljerka, PODOBNIK, Barbara, NOVAK, Metka, KOROŠEC, Branka, BERNE, Sabina, VOGELSANG, Matjaž, KRAŠEVEC, Nada, ZUPANEC, Neja, STOJAN, Jure, BOHLMANN, Joerg, KOMEL, Radovan (2011) The versatility of the fungal cytochrome P450 monooxygenase system is instrumental in xenobiotic detoxification. Mol. Microbiol. 85, 1374-1389.
  6. MARUŠIČ Maja, JERAS Matjaž (2011): Matične celice iz zobnega in obzobnega tkiva ter njihova uporaba v regenerativnem zobozdravstvu (Stem cells from dental and periodontal tissue and their possible application in regenerative dentistry). Farm. Vestn., 62, 1,26-30.
  7. PETERNEL, Špela, KOMEL, Radovan (2011) Active protein aggregates produced in Escherichia coli. Int. J. Mol. Sci. 12, 8275-8287.
  8. STARČEVIĆ, Štefan, KOCBEK, Petra, HRIBAR, Gorazd, LANIŠNIK-RIŽNER, Tea, GOBEC, Stanislav (2011) Biochemical and biological evaluation of novel potent coumarin inhibitor of 17ß-HSD type 1. Chem.-Biol. Interact. 191, 60-65.
  9. ŠUŠTAR, Vid, BEDINA ZAVEC, Apolonija, ŠTUKELJ, Roman, FRANK, Mojca, BOBOJEVIĆ, Goran, JANŠA, Rado, OGOREVC, Eva, KRULJC, Peter, MAM, Keriya, ŠIMUNIČ, Boštjan, MANČEK KEBER, Mateja, JERALA, Roman, ROZMAN, Blaž, VERANIČ, Peter, HÄGERSTRAND, Henry, KRALJ-IGLIČ, Veronika (2011) Nanoparticles isolated from blood : a reflection of vesiculability of blood cells during the isolation process. Int. J. Nanomedicine 6, 2737-2748.
  10. ŠUŠTAR, Vid, BEDINA ZAVEC, Apolonija, ŠTUKELJ, Roman, FRANK, Mojca, OGOREVC, Eva, JANŠA, Rado, KERIYA, Mam, VERANIČ, Peter, KRALJ-IGLIČ, Veronika (2011) Post-prandial rise of microvesicles in peripheral blood of healthy human donors. Lipids in Health and Disease 10, 47.
  11. VOGELSANG, Matjaž, KOMEL, Radovan (2011) Non-truncating hMLH1 variants identified in Slovenian gastric cancer patients are not associated with Lynch syndrome : a functional analysis report. Familial cancer  10, 2, 255-263.

2010

  1. HROVAT, Alenka, BEDINA ZAVEC, Apolonija, POGAČNIK, Azra, FRANGEŽ, Robert, VRECL, Milka (2010) Establishing and functional characterization of an HEK-293 cell line expressing autofluorescently tagged beta-actin (pEYFP-actin) and the neurokinin type 1 receptor (NK1-R). Cell. Mol. Biol. Lett. 15, 1, 55-69.
  2. JEVŠEVAR, Simona, KUNSTELJ, Menči, GABERC-POREKAR, Vladka (2010) PEGylation of therapeutic proteins. Biotechnol. j. 1, 5, 113-128.
  3. PETERNEL, Špela, KOMEL, Radovan (2010) Isolation of biologically active nanomaterial (inclusion bodies) from bacterial cells. Microb Cell Fact 9, 66 [1-16].
  4. PETERNEL, Špela, LIOVIĆ, Mirjana (2010) Production of recombinant proteins in bacteria : the inclusion bodies formation and their use in biomedicine. Recent patents on biomedical engineering, 3, 3, 153-161.