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Departments

Last updated: May 6th 2022

2022

  1. BELLOTTO, Ottavia, KRALJ, Slavko, MELCHIONNA, Michele, PENGO, Paolo, KISOVEC, Matic, PODOBNIK, Marjetka, DE ZORZI, Rita, MARCHESAN, Silvia. Self-assembly of unprotected dipeptides into hydrogels : water-channels make the difference. ChemBioChem, 2021, 23:1-8, doi: 10.1002/cbic.202100518

  2. CHUNG, Christina Z., KRAHN, Natalie, CRNKOVIĆ, Ana, SÖLL, Dieter. Intein-based design expands diversity of selenocysteine reporters. Journal of molecular biology, 2022, 434:1-16, doi: 10.1016/j.jmb.2021.167199

  3. KRAŠEVEC, Nada. The multifaceted role of mating type of the fungus and sex of the host in studies of fungal infections in humans. Journal of fungi, 2022, 8:1-16. doi: 10.3390/jof8050461

  4. MUKAI, Takahito, AMIKURA, Kazuaki, FU, Xian, SÖLL, Dieter, CRNKOVIĆ, Ana. Indirect routes to aminoacyl-tRNA : the diversity of prokaryotic cysteine encoding systems. Frontiers in genetics, Jan. 2022, 12:1-14, doi: 10.3389/fgene.2021.794509.

  5. PIRC, Katja, CLIFTON, Luke A., YILMAZ, Neval, SALTALAMACCHIA, Andrea, MALLY, Mojca, SNOJ, Tina, ŽNIDARŠIČ, Nada, SRNKO, Marija, BORIŠEK, Jure, PODOBNIK, Marjetka, DERGANC, Jure, ANDERLUH, Gregor, et al. An oomycete NLP cytolysin forms transient small pores in lipid membranes. Science advances. 2022, 8:1-12, DOI: 10.1126/sciadv.abj9406.

  6. RITUPER, Boštjan, GUČEK, Alenka, LISJAK, Marjeta, GÓRSKA, Urszula, ŠAKANOVIĆ, Aleksandra, TRKOV, Saša, LASIČ, Eva, BOŽIĆ, Mićo, JORGAČEVSKI, Jernej, KREFT, Marko, VERKHRATSKY, Alexei, ANDERLUH, Gregor, STENOVEC, Matjaž, BOŽIČ, Bojan, ZOREC, Robert (avtor, korespondenčni avtor), et al. Vesicle cholesterol controls exocytotic fusion pore. Cell calcium, 2022, 101:1-17, doi: 10.1016/j.ceca.2021.102503.

  7. VIGLIATURO, Ruggero, JAMNIK, Maja, DRAŽIĆ, Goran, PODOBNIK, Marjetka, TUŠEK-ŽNIDARIČ, Magda, DELLA VENTURA, Giancarlo, REDHAMMER, Günther, ŽNIDARŠIČ, Nada, CASERMAN, Simon, GIERÉ, Reto. Nanoscale transformations of amphiboles within human alveolar epithelial cells. Scientific reports, 12:14 str., doi: 10.1038/s41598-022-05802-x.

2021

  1. BOŽIČ, Darja, HOČEVAR, Matej, KISOVEC, Matic, PAJNIČ, Manca, PAĐEN, Ljubiša, JERAN, Marko, BEDINA ZAVEC, Apolonija, PODOBNIK, Marjetka, KOGEJ, Ksenija, IGLIČ, Aleš, KRALJ-IGLIČ, Veronika. Stability of erythrocyte-derived nanovesicles assessed by light scattering and electron microscopy. International journal of molecular sciences, 2021, 22:1-29, doi: 10.3390/ijms222312772

  2. CHUNG, Christina Z., KRAHN, Natalie, CRNKOVIĆ, Ana, SÖLL, Dieter. Intein-based design expands diversity of selenocysteine reporters. Journal of molecular biology, 2021, 433:1-16, doi: 10.1016/j.jmb.2021.167199

  3. CRNKOVIĆ, Ana, SRNKO, Marija, ANDERLUH, Gregor. Biological nanopores : engineering on demand. Life, 2021, 11: 1-30, doi: 10.3390/life11010027

  4. HALLEGGER, Martina, CHAKRABARTI, Anob M., LEE, Flora C. Y., LEE, Bo Lim, AMALIETTI, Aram-Gustav, ODEH, Hana M., COPLEY, Katie E., RUBIEN, Jack D., PORTZ, Bede, KURET, Klara, HUPPERTZ, Ina, RAU, Frédérique, PATANI, Rickie, FAWZI, Nicolas L., SHORTER, James, LUSCOMBE, Nicholas M., ULE, Jernej. TDP-43 condensation properties specify its RNA-binding and regulatory repertoire. Cell, 2021, 184:e1-e22, doi: 10.1016/j.cell.2021.07.018

  5. JAN, Zala, DRAB, Mitja, DROBNE, Damjana, BEDINA ZAVEC, Apolonija, BENČINA, Mojca, DRAŠLER, Barbara, HOČEVAR, Matej, KREK, Judita Lea, PAĐEN, Ljubiša, PAJNIČ, Manca, REPAR, Neža, ŠIMUNIČ, Boštjan, ŠTUKELJ, Roman, KRALJ-IGLIČ, Veronika. Decrease in cellular nanovesicles concentration in blood of athletes more than 15 hours after marathon. International journal of nanomedicine, 2021, 16:443-456, doi: 10.2147/IJN.S282200

  6. JANEŽIČ, Matej, VALJAVEC, Katja, BERGANT LOBODA, Kaja, HERLAH, Barbara, OGRIS, Iza, KOZOROG, Mirijam, PODOBNIK, Marjetka, GOLIČ GRDADOLNIK, Simona, WOLBER, Gerhard, PERDIH, Andrej. Dynophore-based approach in virtual screening : a case of human DNA topoisomerase IIα. International journal of molecular sciences, 2021, 22:1-24, doi: 10.3390/ijms222413474

  7. KOČAR, Eva, LENARČIČ, Tea, HODNIK, Vesna, PANEVSKA, Anastasija, HUANG, Yunjie, BAJC, Gregor, KOSTANJŠEK, Rok, NAREN, Anjaparavanda P., MAČEK, Peter, ANDERLUH, Gregor, SEPČIĆ, Kristina, PODOBNIK, Marjetka, BUTALA, Matej. Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine. Scientific reports, 2021, 11:1-12, doi: 10.1038/s41598-021-85956-2

  8. KOSTEVŠEK, Nina, MIKLAVC, Patricija, KISOVEC, Matic, PODOBNIK, Marjetka, AL-JAMAL, Wafa, SERŠA, Igor. Magneto-erythrocyte membrane vesicles' superior T2 MRI contrast agents to magneto-liposomes. Magnetochemistry, 2021, 7:51-1-51-14, doi: 10.3390/magnetochemistry7040051

  9. KRAŠEVEC, Nada, PANEVSKA, Anastasija, LEMEŽ, Špela, RAZINGER, Jaka, SEPČIĆ, Kristina, ANDERLUH, Gregor, PODOBNIK, Marjetka. Lipid-binding aegerolysin from biocontrol fungus beauveria bassiana. Toxins, 2021, 13:1-23, https://www.mdpi.com/2072-6651/13/11/820, doi: 10.3390/toxins13110820

  10. KULMA, Magdalena, ANDERLUH, Gregor. Beyond pore formation : reorganization of the plasma membrane induced by pore-forming proteins. Cellular and molecular life sciences, 2021, 78:6229-6249, doi: 10.1007/s00018-021-03914-7

  11. LAINŠČEK, Duško, FINK, Tina, FORSTNERIČ, Vida, HAFNER BRATKOVIČ, Iva, OREHEK, Sara, STRMŠEK, Žiga, MANČEK KEBER, Mateja, PEČAN, Peter, ESIH, Hana, MALENŠEK, Špela, AUPIČ, Jana, DEKLEVA, Petra, PLAPER, Tjaša, VIDMAR, Sara, KADUNC, Lucija, BENČINA, Mojca, OMERSA, Neža, ANDERLUH, Gregor, POJER, Florence, LAU, Kelvin, HACKER, David, CORREIA, Bruno E., PETERHOFF, David, WAGNER, Ralf, BERGANT, Valter, HERRMANN, Alexander, PICHLMAIR, Andreas, JERALA, Roman. A nanoscaffolded spike-RBD vaccine provides protection against SARS-CoV-2 with minimal anti-scaffold response. Vaccines, 2021, 9:1-21, doi: 10.3390/vaccines9050431

  12. LOPEZ-MENDEZ, Blanca, BARON, Bruno, BRAUTIGAM, Chad A., JOWITT, Thomas A., KNAUER, Stefan H., UEBEL, Stephan, WILLIAMS, Mark A., SEDIVY, Arthur, ABIAN, Olga, ABREU, Celeste, ADAMCZYK, Malgorzata, BAL, Wojciech, BERGER, Sylvie, BUELL, Alexander K., CAROLIS, Carlo, DAVITER, Tina, FISH, Alexander, GARCIA-ALAI, Maria, GUENTHER, Christian, HAMACEK, Josef, HOLKOVÁ, Jitka, HOUSER, Josef, JOHNSON, Chris, KELLY, Sharon, LEECH, Andrew, MAS, Caroline, MATULIS, Daumantas, MCLAUGHLIN, Stephen H., MONTSERRET, Roland, NASREDDINE, Rouba, NEHMÉ, Reine, NGUYEN, Quyen, ORTEGA-ALARCÓN, David, PEREZ, Kathryn, PIRC, Katja, PISZCZEK, Grzegorz, PODOBNIK, Marjetka, RODRIGO, Natalia, ROKOV PLAVEC, Jasmina, SCHAEFER, Susanne, SHARPE, Tim, SOUTHALL, June, STAUNTON, David, TAVARES, Pedro B., VANEK, Ondrej, WEYAND, Michael, WU, Di. Reproducibility and accuracy of microscale thermophoresis in the NanoTemper Monolith : a multi laboratory benchmark study. European biophysics journal, 2021, 50:411-427, doi: 10.1007/s00249-021-01532-6

  13. MAMMADOVA, Ramila, FIUME, Immacolata, BOKKA, Ramesh, KRALJ-IGLIČ, Veronika, BOŽIČ, Darja, KISOVEC, Matic, PODOBNIK, Marjetka, BEDINA ZAVEC, Apolonija, HOČEVAR, Matej, GELLÉN, Gabriella, SCHLOSSER, Gitta, POCSFALVI, Gabriella. Identification of tomato infecting viruses that co-isolate with nanovesicles using a combined proteomics and electron-microscopic approach. Nanomaterials, 2021, 8: 1-19, doi: 10.3390/nano11081922

  14. MODICA, Maria Vittoria, AHMAD, Rafi, AINSWORTH, Stuart, ANDERLUH, Gregor, ANTUNES, Agostinho, BEIS, Dimitris, CALISKAN, Figen, DALLA SERRA, Mauro, DUTERTRE, Sebastien, MORAN, Yehu, NALBANTSOY, Ayse, OUKKACHE, Naoual, PEKAR, Stano, REMM, Maido, REUMONT, Bjoern Marcus von, SARIGIANNIS, Yiannis, TARALLO, Andrea, TYTGAT, Jan, BASTE UNDHEIM, Eivind Andreas, UTKIN, Yuri, VERDES, Aida, VIOLETTE, Aude, ZANCOLLI, Giulia. The new COST Action European Venom Network (EUVEN)-synergy and future perspectives of modern venomics. GigaScience, 2021, 10:1-5, doi: 10.1093/gigascience/giab019.

  15. ÖNDER, Özgün Can, UTROŠA, Petra, CASERMAN, Simon, PODOBNIK, Marjetka, ŽAGAR, Ema, PAHOVNIK, David. Preparation of synthetic polypeptide-polyHIPE hydrogels with stimuli-responsive behavior. Macromolecules, 2021, 54:A-J, doi: 10.1021/acs.macromol.1c01490

  16. PETRIŠIČ, Nejc, KOZOROG, Mirijam, ADEN, Saša, PODOBNIK, Marjetka, ANDERLUH, Gregor. The molecular mechanisms of listeriolysin O-induced lipid membrane damage. Biochimica et biophysica acta, Biomembranes, 2021, 1863:183604-1-183604-15, doi: 10.1016/j.bbamem.2021.183604

  17. PIRC, Katja, HODNIK, Vesna, SNOJ, Tina, LENARČIČ, Tea, CASERMAN, Simon, PODOBNIK, Marjetka, KOTAR, Anita, PLAVEC, Janez, BORIŠEK, Jure, BRUS, Boris, SOSIČ, Izidor, GOBEC, Stanislav, ANDERLUH, Gregor, et al. Nep1-like proteins as a target for plant pathogen control. PLOS pathogens, ISSN 1553-7374, 2021, 17:1-20, doi: 10.1371/journal.ppat.1009477

  18. QIN, Weihua, UGUR, Enes, MULHOLLAND, Christopher B., BULTMANN, Sebastian, SOLOVEI, Irina, MODIC, Miha, SMETS, Martha, WIERER, Michael, FORNÉ, Ignasi, IMHOF, Axel, CARDOSO, Cristina, LEONHARDT, Heinrich. Phosphorylation of the HP1[beta] hinge region sequesters KAP1 in heterochromatin and promotes the exit from naïve pluripotency. Nucleic acids research, 2021, 49:7406-7423, doi: 10.1093/nar/gkab548

  19. RESNIK, Nataša, TRATNJEK, Larisa, ERDANI-KREFT, Mateja, KISOVEC, Matic, ADEN, Saša, BEDINA ZAVEC, Apolonija, ANDERLUH, Gregor, PODOBNIK, Marjetka, VERANIČ, Peter. Cytotoxic activity of LLO Y406A is targeted to the plasma membrane of cancer urothelial cells. International journal of molecular sciences, 2021, 22:3305-1-3305-15, doi: 10.3390/ijms22073305

  20. VAN MIDDEN, Katarina Petra, PERIC, Tanja, KLEMENČIČ, Marina. Plant type I metacaspases are proteolytically active proteases despite their hydrophobic nature. FEBS Letters, ISSN 1873-3468. 2021, 595:2237-2247, doi: 10.1002/1873-3468.14165

  21. VARGAS-RODRIGUEZ, Oscar, BADRAN, Ahmed H., HOFFMAN, Kyle S., CHEN, Manyun, CRNKOVIĆ, Ana, DING, Yousong, KRIEGER, Jonathan R., WESTHOF, Eric, SÖLL, Dieter, MELNIKOV, Sergey. Bacterial translation machinery for deliberate mistranslation of the genetic. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118:1-10, doi: 10.1073/pnas.2110797118

  22. XIAO, Han, WYLER, Emanuel, MILEK, Miha, GREWE, Bastian, KIRCHNER, Philipp, EKICI, Arif, SILVA, Ana Beatriz Oliveira Villela, JUNGNICKL, Doris, FULL, Florian, THOMAS, Marco, LANDTHALER, Markus, ENSSER, Armin, ÜBERLA, Klaus. CRNKL1 is a highly selective regulator of intron-retaining HIV-1 and cellular mRNAs. mBio, 2021, 12:1-24,  doi: 10.1128/mBio.02525-20

2020

  1. BABAIAN, Artem, ROTHE, Katharina, GIRODAT, Dylan, MINIA, Igor, DJONDOVIC, Sara, MILEK, Miha, SPENCER MIKO, Sandra E., WIEDEN, Hans-Joachim, LANDTHALER, Markus, MORIN, Gregg B., MAGER, Dixie L. Loss of m1acp3ψ ribosomal RNA modification is a major feature of cancer. Cell reports, 2020, 31:107611-1-107611-e8, doi: 10.1016/j.celrep.2020.107611

  2. CAPITANCHIK, Charlotte, TOOLAN-KERR, Patrick, LUSCOMBE, Nicholas M., ULE, Jernej. How do you identify m6 a methylation in transcriptomes at high resolution? A comparison of recent datasets. Frontiers in genetics, 2020, 11:398-1-398-12, doi: 10.3389/fgene.2020.00398

  3. DERMIT, Maria, DODEL, Martin, LEE, Flora C. Y., AZMAN, Muhammad S., SCHWENZER, Hagen, JONES, J. Louise, BLAGDEN, Sarah P., ULE, Jernej, MARDAKHEH, Faraz K. Subcellular mRNA localization regulates ribosome biogenesis in migrating cells. Developmental cell, 2020, 55:298-313, e1-e10, doi: 10.1016/j.devcel.2020.10.006

  4. GAJDUŠKOVÁ, Pavla, MOZOS, Igor Ruiz de los, RÁJECKÝ, Michal, HLUCHÝ, Milan, ULE, Jernej, BLAZEK, Dalibor. CDK11 is required for transcription of replication-dependent histone genes. Nature structural & molecular biology, 2020, 27:500-510, doi: 10.1038/s41594-020-0406-8

  5. KISOVEC, MaticANDERLUH, GregorPODOBNIK, MarjetkaCASERMAN, Simon. In-line detection of monoclonal antibodies in the effluent of protein A chromatography with QCM sensor. Analytical biochemistry, 2020, 608:113899-1-113899-6, doi: 10.1016/j.ab.2020.113899

  6. KRAŠEVEC, Nada, NOVAK, Maruša, BARAT, Simona, SKOČAJ, Matej, SEPČIĆ, Kristina, ANDERLUH, Gregor. Unconventional secretion of nigerolysins a from Aspergillus Species. Microorganisms, 2020, 8:1-23, doi: 10.3390/microorganisms8121973

  7. LAURIA, Fabio, BERNABÒ, Paola, TEBALDI, Toma, GROEN, Ewout Joan Nicolaas, PERENTHALER, Elena, MANISCALCO, Federica, ROSSI, Annalisa, DONZEL, Deborah, CLAMER, Massimiliano, MARCHIORETTO, Marta, OMERSA, Neža, ORRI, Julia, DALLA SERRA, Mauro, ANDERLUH, Gregor, QUATTRONE, Alessandro, INGA, Alberto, GILLINGWATER, Thomas Henry, VIERO, Gabriella. SMN-primed ribosomes modulate the translation of transcripts related to spinal muscular atrophy. Nature cell biology, 2020, 22:1239-1251, doi: 10.1038/s41556-020-00577-7

  8. LA PIETRA, Luigi, HUDEL, Martina, PILLICH, Helena, MRAHEIL, Mobarak A., BERISHA, Besim, ADEN, SašaHODNIK, Vesna, LOCHNIT, Günter, RAFIQ, Amir, PERNISS, Alexander, ANDERLUH, Gregor, CHAKRABORTY, Trinad. Phosphocholine antagonizes listeriolysin O-induced host cell responses of Listeria monocytogenes. The Journal of infectious diseases, 2020, 1-36, doi: 10.1093/infdis/jiaa022

  9. MEYER, Vera, BASENKO, Evelina Y., BENZ, J. Philipp, BRAUS, Gerhard H., CADDICK, Mark X., CSUKAI, Michael, VRIES, Ronald P. de, ENDY, Drew, FRISVAD, Jens Christian, GUNDE-CIMERMAN, Nina, HAARMANN, Thomas, HADAR, Yitzhak, HANSEN, Kim, JOHNSON, Robert I., KELLER, Nancy P., KRAŠEVEC, Nada, MORTENSEN, Uffe H., PÉREZ, Rolando, RAM, Arthur F. J., RECORD, Eric, ROSS, Phil, SHAPAVAL, Volha, STEINIGER, Charlotte, VAN DEN BRINK, Hans, MUNSTER, Jolanda van, YARDEN, Oded, WÖSTEN, Han A. B. Growing a circular economy with fungal biotechnology : a white paper. Fungal biology and biotechnology, 2020, 7:5-1-5-23, doi: 10.1186/s40694-020-00095-z

  10. MODIC, Miha, CACCHIARELLI, Davide, BERGE, Derk ten. Integrative biology studies in pluripotent stem cells. Stem cell research,2020, 42:101686-1-101686-2, doi: 10.1016/j.scr.2019.101686

  11. MULHOLLAND, Christopher B., NISHIYAMA, Atsuya, RYAN, Joel, NAKAMURA, Ryohei, YIĞIT, Merve, GLÜCK, Ivo M., TRUMMER, Carina, QIN, Weihua, BARTOSCHEK, Michael D., TRAUBE, Franziska R., PARSA, Edris, UGUR, Enes, MODIC, Miha, ACHARYA, Aishwarya, STOLZ, Paul, ZIEGENHAIN, Christoph, WIERER, Michael, ENARD, Wolfgang, CARELL, Thomas, LAMB, Don C., TAKEDA, Hiroyuki, NAKANASHI, Makoto, BULTMANN, Sebastian, LEONHARDT, Heinrich. Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals. Nature communications, 2020, 11:5972-1-5972-24, doi: 10.1038/s41467-020-19603-1

  12. MULHOLLAND, Christopher B., TRAUBE, Franziska R., UGUR, Enes, PARSA, Edris, ECKL, Eva-Maria, SCHÖNUNG, Maximilian, MODIC, Miha, BARTOSCHEK, Michael D., STOLZ, Paul, RYAN, Joel, CARELL, Thomas, LEONHARDT, Heinrich, BULTMANN, Sebastian. Distinct and stage-specific contributions of TET1 and TET2 to stepwise cytosine oxidation in the transition from naive to primed pluripotency. Scientific reports, 2020, 10:12066-1-12066-12, doi: 10.1038/s41598-020-68600-3

  13. NEAGU, Alex, GENDEREN, Emiel van, ESCUDERO, Irene, VERWEGEN, Lucas, KUREK, Dorota, LEHMANN, Johannes, STEL, Jente, DIRKS, René A. M., MIERLO, Guido van, MODIC, Miha, et al. In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states. Nature cell biology, 2020, 22:534-545, doi: 10.1038/s41556-020-0508-x

  14. NI, Tao, JIAO, Fang, YU, Xiulian, ADEN, Saša, GINGER, Lucy, WILLIAMS, Sophie I., BAI, Fangfang, PRAŽÁK, Vojtěch, KARIA, Dimple, STANSFELD, Phillip, ZHANG, Peijun, MUNSON, George, ANDERLUHGregor, SCHEURING, Simon, GILBERT, Robert J. C. Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity. Science Advances 2020, 6:1-12, https://doi.org/10.1126/sciadv.aax8286

  15. OMERSA, NežaADEN, SašaKISOVEC, MaticPODOBNIK, MarjetkaANDERLUH, Gregor. Design of protein logic gate system operating on lipid membranes. ACS Synth Biol. 2020, 9:316-328, https://doi.org/10.1021/acssynbio.9b00340

  16. ÖNDER, Özgün Can, UTROŠA, Petra, CASERMAN, SimonPODOBNIK, Marjetka, TUŠEK-ŽNIDARIČ, Magda, GRDADOLNIK, Jože, KOVAČIČ, Sebastijan, ŽAGAR, Ema, PAHOVNIK, David. Emulsion-templated synthetic polypeptide scaffolds prepared by ring-opening polymerization of N-carboxyanhydrides. Polymer chemistry, 2020, 1-11, doi: 10.1039/d0py00387e

  17. RUNDQVIST, Helene, VELIÇA, Pedro, BARBIERI, Laura, GAMEIRO, Paulo A., BARGIELA, David, GOJKOVIC, Milos, MIJWEL, Sara, REITZNER, Stefan Markus, WULLIMAN, David, AHLSTEDT, Emil, ULE, Jernej, ÖSTMAN, Arne, JOHNSON, Randall S. Cytotoxic T-cells mediate exercise-induced reductions in tumor growth. eLife, 2020, 9:e59996-1-e59996-25, doi: 10.7554/eLife.59996

  18. SILLA, Toomas, SCHMIDL, Manfred, DOU, Yuhui, GARLAND, William, MILEK, Miha, IMAMI, Koshi, JOHNSEN, Dennis, POLAK, Patrik, ANDERSEN, Jens S., SELBACH, Matthias, LANDTHALER, Markus, JENSEN, Torben Heick. The human ZC3H3 and RBM26/27 proteins are critical for PAXT-mediated nuclear RNA decay. Nucleic acids research, 2020, 1-13, doi: 10.1093/nar/gkz1238

  19. STARE, Katja, COLL RIUS, Anna, GUTIÉRREZ-AGUIRRE, Ion, TUŠEK-ŽNIDARIČ, Magda, RAVNIKAR, Maja, KEŽAR, AndrejaKAVČIČ, LukaPODOBNIK, Marjetka, GRUDEN, Kristina. Generation and in Planta functional analysis of Potato virus Y mutants. Bio-protocol, 2020, 10:e3692-1-e3692-19, doi: 10.21769/BioProtoc.3692

  20. SUŠJAN, Petra, LAINŠČEK, Duško, STRMŠEK, Žiga, HODNIK, Vesna, ANDERLUH, Gregor, HAFNER BRATKOVIČ, Iva. Selective inhibition of NLRP3 inflammasome by designed peptide originating from ASC. The FASEB journal, 2020, 34:11068-11086, doi: 10.1096/fj.201902938RR

  21. ŠAKANOVIĆ, Aleksandra, KRANJC, Nace, OMERSA, NežaPODOBNIK, MarjetkaANDERLUH, Gregor. More than one way to bind to cholesterol : atypical variants of membrane-binding domain of perfringolysin O selected by ribosome display. RSC advances, 2020, 10:38678-38682, doi: 10.1039/D0RA06976K

2019 

  1.  

    HEIM, Joel Benjamin, HODNIK, Vesna, HEGGELUND, Julie Elisabeth, ANDERLUH, Gregor, KRENGEL, Ute. Crystal structures of cholera toxin in complex with fucosylated receptors point to importance of secondary binding site. Scientific reports, 2019, 9:12243-1-12243-14, doi: 10.1038/s41598-019-48579-2

  2. HEGGELUND, Julie Elisabeth, HEIM, Joel Benjamin, BAJC, Gregor, HODNIK, VesnaANDERLUH, Gregor, KRENGEL, Ute. Specificity of Escherichia coli heat-labile enterotoxin investigated by single-site mutagenesis and crystallography. International journal of molecular sciences, 2019, 20:1-17, doi: 10.3390/ijms20030703
  3. KEKEZ, Mario, ZANKI, Vladimir, KEKEZ, Ivana, BARANASIC, Jurica, HODNIK, Vesna, DUCHÊNE, Anne-Marie, ANDERLUH, Gregor, GRUIĆ-SOVULJ, Ita, MATKOVIĆ ČALOGOVIĆ, Dubravka, WEYGAND-DURAŠEVIĆ, Ivana, ROKOV PLAVEC, Jasmina. Arabidopsis seryl-tRNA synthetase : the first crystal structure and novel protein interactor of plant aminoacyl-tRNA synthetase. FEBS journal, 2019, 286:536-554, doi: 10.1111/febs.14735
  4. KEŽARAndrejaKAVČIČLuka, PÓLAK, Martin, NOVÁČEK, Jiři, GUTIÉRREZ-AGUIRRE, Ion, TUŠEK-ŽNIDARIČ, Magda, COLL RIUS, Anna, STARE, Katja, GRUDEN, Kristina, RAVNIKAR, Maja, PAHOVNIK, David, ŽAGAR, Ema, MERZEL, Franci, ANDERLUHGregorPODOBNIKMarjetka. Structural basis for the multitasking nature of the potato virus Y coat protein. Science advances, 2019:1-13, doi: 10.1126/sciadv.aaw3808
  5. KULMA, Magdalena, DADLEZ, Michał, KWIATKOWSKA, Katarzyna. Insight into the structural dynamics of the lysenin during prepore-to-pore transition using hydrogen-deuterium exchange mass spectrometry. Toxins, 2019, 11:1-24, doi: 10.3390/toxins11080462
  6. KULMA, Magdalena, KACPRZYK-STOKOWIEC, Aleksandra, TRACZYK, Gabriela, KWIATKOWSKA, Katarzyna, DADLEZ, Michał. Fine-tuning of the stability of β-strands by Y181 in perfringolysin O directs the prepore to pore transition. Biochimica et biophysica acta, Biomembranes, 2019, 1861:110-122, doi: 10.1016/j.bbamem.2018.08.008
  7. LASIČ, Eva, LISJAK, Marjeta, HORVAT, Anemari, BOŽIĆ, Mićo, ŠAKANOVIĆAleksandraANDERLUH, Gregor, VERKHRATSKY, Alexei, VARDJAN, Nina, JORGAČEVSKI, Jernej, STENOVEC, Matjaž, ZOREC, Robert. Astrocyte specific remodeling of plasmalemmal cholesterol composition by ketamine indicates a new mechanism of antidepressant action. Scientific reports, 2019, 9:1-12 doi: 10.1038/s41598-019-47459-z
  8. LENARČIČ, TeaPIRC, KatjaHODNIK, Vesna, ALBERT, Isabell, BORIŠEK, Jure, MAGISTRATO, Alessandra, NÜRNBERGER, Thorsten, PODOBNIK, MarjetkaANDERLUH, Gregor. Molecular basis for functional diversity among microbial Nep1-like proteins. PLOS pathogens, 2019, 15:e1007951-1-e1007951-23. doi: 10.1371/journal.ppat.1007951
  9. NOVAK, Maruša, ČEPIN, Urška, HODNIKVesna, NARAT, Mojca, JAMNIKMajaKRAŠEVECNada, SEPČIĆ, Kristina, ANDERLUHGregor. Functional studies of aegerolysin and MACPF-like proteins in Aspergillus niger. Molecular microbiology, 2019, 112:1253-1269, doi: 10.1111/mmi.14360
  10. OMERSA, NežaPODOBNIK, MarjetkaANDERLUH, Gregor. Inhibition of pore-forming proteins. Toxins, 2019, 11:545-1-545-22, doi: 10.3390/toxins11090545
  11. PIRC, Matija, CASERMAN, Simon, FERK, Polonca, TOPIČ, Marko. Compact UV LED lamp with low heat emissions for biological research applications. Electronics, ISSN 2079-9292, 2019, doi: 10.3390/electronics8030343
  12. PLAZA-GA, Ismael, MANZANEDA-GONZÁLEZ, Vanesa, KISOVEC, Matic, ALMENDRO-VEDIA, Víctor, MUÑOZ-ÚBEDA, Mónica, ANDERLUH, Gregor, GUERRERO-MARTÍNEZ, Andrés, NATALE, Paolo, LÓPEZ MONTERO, Iván López. pH-triggered endosomal escape of pore-forming Listeriolysin O toxin-coated gold nanoparticles. Journal of nanobiotechnology, 2019, 17:108-1-108-10. doi: 10.1186/s12951-019-0543-6
  13. REBERNIK, Mateja, SNOJ, Tina, KLEMENČIČ, Marina, NOVINEC, Marko. Interplay between tetrameric structure, enzymatic activity and allosteric regulation of human dipeptidyl-peptidase I. Archives of biochemistry and biophysics, 2019, 675:1-11, doi: 10.1016/j.abb.2019.108121
  14. ŠAKANOVIĆ, AleksandraHODNIK, VesnaANDERLUH, Gregor. Surface plasmon resonance for measuring interactions of proteins with lipids and lipid membranes. V: KLEINSCHMIDT, Jörg H. (ur.). Lipid-protein interactions : methods and protocols, (Methods in molecular biology (Clifton, N.J.) 2nd ed. New York: Humana Press. cop. 2019, 53-70, https://link.springer.com/content/pdf/10.1007%2F978-1-4939-9512-7.pdf

2018

  1. ADEN, SašaKOZOROG, MirijamŠVIGELJ, Tomaž, POKLAR ULRIH, Nataša, ŽNIDARŠIČ, Nada, PODOBNIK, MarjetkaANDERLUH, Gregor. Cholesterol enriched archaeosomes as a molecular system for studying interactions of cholesterol-dependent cytolysins with membranes. The journal of membrane biology, 2018, doi: 10.1007/s00232-018-0018-y
  2. BORIŠEK, Jure, PINTAR, Sara, OGRIZEK, Mitja, GOLIČ GRDADOLNIK, Simona, HODNIK, Vesna, TURK, Dušan, PERDIH, Andrej, NOVIČ, Marjana. Discovery of (phenylureido)piperidinyl benzamides as prospective inhibitors of bacterial autolysin E from Staphylococcus aureusJournal of enzyme inhibition and medicinal chemistry, 2018, doi: 10.1080/14756366.2018.1493474
  3. FORNELOS, Nadine, BROWNING, Douglas F., PAVLIN, Anja, PODLESEK, Zdravko, HODNIK, Vesna, SALAS, Margarita, BUTALA, Matej. Lytic gene expression in the temperate bacteriophage GIL01 is activated by a phage-encoded LexA homologue. Nucleic acids research, 2018, doi: 10.1093/nar/gky646
  4. GROM, Matic, KOZOROG, MirijamCASERMAN, Simon, POHAR, Andrej, LIKOZAR, Blaž. Protein A affinity chromatography of Chinese hamster ovary (CHO) cell culture broths containing biopharmaceutical monoclonal antibody (mAb): Experiments and mechanistic transport, binding and equilibrium modeling. Journal of Chromatography B Analytical Technologies in the Biomedical and Life Sciences. 2018, doi: 10.1016/j.jchromb.2018.02.032
  5. KRULJEC, Nika, MOLEK, Peter, HODNIK, Vesna, ANDERLUH, Gregor, BRATKOVIČ, Tomaž. Development and characterization of peptide ligands of immunoglobulin G Fc region. Bioconjugate chemistry, 2018, doi: 10.1021/acs.bioconjchem.8b00395
  6. KOZOROG, Mirijam, SANI, Marc-Antonie, SEPAROVIC, Frances, ANDERLUH, Gregor. Listeriolysin O binding affects cholesterol and phospholipid acyl chain dynamics in fluid cholesterol-rich bilayers. Chem. Eur. J. 2018, doi:  10.1002/chem.201802575
  7. KOZOROG, Mirijam, SANI, Marc-Antonie, LENARČIČ ŽIVKOVIĆ, Martina, ILC, Gregor, HODNIK, Vesna, SEPAROVIC, Frances, PLAVEC, Janez, ANDERLUH, Gregor19F NMR studies provide insights into lipid membrane interactions of listeriolysin O, a pore forming toxin from Listeria monocytogenesScientific Reports, 2018, 8:6894, doi:10.1038/s41598-018-24692-6
  8. NI, Tao, WILLIAMS, Sophie I, ADEN, SašaANDERLUH, GregorHARLOS, Karl, STANSFELD, Phillip J, GILBERT, Robert J.C. Structures of monomeric and oligomeric forms of the Toxoplasma gondii perforin-like protein 1. Science Advances, 2018, 4, doi: 10.1126/sciadv.aaq0762
  9. THÉRY, Clotilde, WITWER, Kenneth W, AIKAWA, Elena, ALCARAZ, Maria-José, ANDERSON, Johnathon D, ANDRIANTSITOHAINA, Ramaroson, ANTONIOU, Anna, ARAB, Tanina, BEDINA ZAVEC, Apolonija, LENASSI, Metka, et al. Minimal information for studies of extracellular vesicles 2018 (MISEV2018) : a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines. Journal of extracellular vesicles, 2018, 7, doi: 10.1080/20013078.2018.1535750
  10. TIBAUT, Tjaša, TOMAŠIČ, Tihomir, HODNIK, Vesna, ANDERLUH, Marko, PINTAR, Sara, NOVIČ, Marjana, TURK, Dušan. Application of fragment based virtual screening towards inhibition of bacterial N-acetyglucosaminidase. SAR and QSAR in environmental research, 2018, doi: 10.1080/1062936X.2018.1504116
  11. VEZOČNIK, Valerija, HODNIK, Vesna, SITAR, Simona, OKUR, Halil I., TUŠEK-ŽNIDARIČ, Magda, LÜTGEBAUCKS, Cornelis, SEPČIĆ, Kristina, KOGEJ, Ksenija, ROKE, Sylvie, ŽAGAR, Ema, MAČEK, Peter. Kinetically stable triglyceride-based nanodroplets and their interactions with lipid-specific proteins. Langmuir, 2018, 34, doi: 10.1021/acs.langmuir.8b02180
  12. VRHOVEC, Saša, BOŽIČ, Bojan, DERGANC, Jure. Migration of blood cells and phospholipid vesicles induced by concentration gradients in microcavities. New biotechnology, 2018, 47, doi: 10.1016/j.nbt.2018.02.015
  13. ZEMLJIČ JOKHADAR, Špela, KLANČNIK, Urška, GRUNDNER, Maja, ŠVELC, Tjaša, VRHOVEC, Saša, LIOVIĆ, Mirjana, DERGANC, Jure. GPMVs in variable physiological conditions : could they be used for therapy delivery? BMC biophysics, 2018, 11, doi: 10.1186/s13628-017-0041-x

2017

  1. BUTALA, Matej, NOVAK, Maruša, KRAŠEVEC, Nada, SKOČAJ, Matej, VERANIČ, Peter, MAČEK, Peter, SEPČIĆ, Kristina. Aegerolysins: lipid-binding proteins with versatile functions. Seminars in cell & developmental biology, 2017, 72, doi: 10.1016/j.semcdb.2017.05.002
  2. GILBERT, Robert J., BAYLEY, Hagan, ANDERLUH, Gregor. Membrane pores : from structure and assembly, to medicine and technology. Philosophical transactions : Biological Sciences, 2017, 372, doi: 10.1098/rstb.2016.0208
  3. KISOVEC, MaticREZELJ, Saša, KNAP, Primož, CAJNKO, Miša Mojca, CASERMAN, SimonFLAŠKER, Ajda, ŽNIDARŠIČ, Nada, REPIČ, Matej, MAVRI, Janez, RUAN, Yi, SCHEURING, Simon, PODOBNIK, MarjetkaANDERLUH, Gregor. Engineering a pH responsive pore forming protein. Scientific reports, 2017, doi: 10.1038/srep42231
  4. LENARČIČ, Tea, ALBERT, Isabell, BÖHM, Hannah, HODNIK, VesnaPIRC, KatjaBEDINA ZAVEC, ApolonijaPODOBNIK, Marjetka, PAHOVNIK, David, ŽAGAR, Ema, PRUITT, Rory, GREIMEL, Peter, YAMAJI-HASEGAWA, Akiko, KOBAYASHI, Toshihide, ZIENKIEWICZ, Agnieszka, GÖMANN, Jasmin, MORTIMER, Jenny C., FANG, Lin, MAMODE-CASSIM, Adiilah, DELEU, Magali, LINS, Laurence, OECKING, Claudia, FEUSSNER, Ivo, MONGRAND, Sébastien, ANDERLUH, Gregor, NÜRNBERGER, Thorsten. Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins. Science, 2017, 358, doi: 10.1126/science.aan6874
  5. MAKINO, Asami, ABE, Mitsuhiro, ISHITSUKA, Reiko, MURATE, Motohide, KISHIMOTO, Takuma, SAKAI, Shota, HULLIN-MATSUDA, Francoise, SHIMADA, Yukiko, INABA, Takehiko, MIYATAKE, Hideyuki, TANAKA, Hideko, KURAHASHI, Atsushi, PACK, Chan-Gi, KASAI, Rinshi S., KUBO, Shuku, SCHIEBER, Nicole L., DOHMAE, Naoshi, TOCHIO, Naoya, HAGIWARA, Kyoji, SASAKI, Yutaka, AIDA, Yoko, FUJIMORI, Fumihiro, KIGAWA, Takanori, NISHIBORI, Kozo, PARTON, Robert G., KUSUMI, Akihiro, SAKO, Yasushi, ANDERLUH, Gregor, YAMASHITA, Makoto, KOBAYASHI, Tetsuyuki, GREIMEL, Peter, KOBAYASHI, Toshihide. A novel sphingomyelin/cholesterol domain-specific probe reveals the dynamics of the membrane domains during virus release and in Niemann-Pick type C. The FASEB journal, 2017, 31, doi: 10.1096/fj.201500075R
  6. NI, Tao, KALLI, Antreas C., NAUGHTON, Fiona B., YATES, Luke A., NANEH, Omar, KOZOROG, MirijamANDERLUH, Gregor, SANSOM, Mark S.P., GILBERT, Robert J. Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain. Biochemical journal, 2017, 474, doi: 10.1042/BCJ20160791
  7. PODOBNIK, MarjetkaANDERLUH, Gregor. Pore-forming toxins in Cnidaria. Seminars in cell & developmental biology, 2017, doi: 10.1016/j.semcdb.2017.07.026
  8. PODOBNIK, MarjetkaKISOVEC, MaticANDERLUH, Gregor. Molecular mechanism of pore formation by aerolysin-like proteins. Philosophical transactions : Biological Sciences, 2017, 372, doi: 10.1098/rstb.2016.0209
  9. REŽEN, Tadeja, HAFNER, Mateja, KORTAGERE, Sandhya, EKINS, Sean, HODNIK, Vesna, ROZMAN, Damjana. Rosuvastatin and atorvastatin are ligands of the human CAR/RXR[alpha] complex. Drug metabolism and disposition, 2017, 45, doi: 10.1124/dmd.117.075523
  10. ŠINK, Andreja. Gensko zdravljenje z virusnimi vektorji = Viral vectors in gene therapy. Farmacevtski vestnik : strokovno glasilo slovenske farmacije, 2017
  11. ŠTUKELJ, Roman, SCHARA, Karin, BEDINA ZAVEC, Apolonija, ŠUŠTAR, Vid, PAJNIČ, Manca, PAĐEN, Ljubiša, KREK, Judita Lea, KRALJ-IGLIČ, Veronika, MRVAR BREČKO, Anita, JANŠA, Rado. Effect of shear stress in the flow through the sampling needle on concentration of nanovesicles isolated from blood. European Journal of Pharmaceutical Sciences, 2017, 98, doi: 10.1016/j.ejps.2016.10.007
  12. VRIES, Ronald P. de, ANDERLUH, GregorKRAŠEVEC, Nada, SEPČIĆ, Kristina, et al. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome biology, 2017, 18, doi: 10.1186/s13059-017-1151-0

2016

  1. BEDINA ZAVEC, Apolonija, KRALJ-IGLIČ, Veronika, BRINC, Matjaž, FICKO TRČEK, Tanja, KUZMAN, Drago, SCHWEIGER, Ana, ANDERLUH, Gregor. Extracellular vesicles concentration is a promising and important parameter for industrial bioprocess monitoring. Biotechnology journal, 2016, 11, doi: 10.1002/biot.201500049
  2. FAIS, Stefano, OʼDRISCOLL, Lorraine, BORRÀS, Francesc E., BUZAS, Edit I., CAMUSSI, Giovanni, CAPPELLO, Francesco, CARVALHO, Joana, SILVA, Anabela Cordeiro da, PORTILLO, Hernando del, EL ANDALOUSSI, Samir, FICKO, Tanja, KRALJ-IGLIČ, Veronika, BEDINA ZAVEC, Apolonija, et al. Evidence-based clinical use of nanoscale extracellular vesicles in nanomedicine. ACS nano, 2016, doi: 10.1021/acsnano.5b08015
  3. FÜRTGES, Leon, CONRADT, David, SCHÄTZLE, Michael A., SINGH, Shailesh Kumar, KRAŠEVEC, Nada, LANIŠNIK-RIŽNER, Tea, MÜLLER, Michael, HUSAIN, Syed Masood. Phylogenetic studies, gene cluster analysis, and enzymatic reaction support anthrahydroquinone reduction as the physiological function of fungal 17β-hydroxysteroid dehydrogenase. ChemBioChem, 2016, 7, doi: 10.1002/cbic.201600489
  4. HEGGELUND, Julie Elisabeth, BURSCHOWSKY, Daniel, BJØRNESTAD, Victoria Ariel, HODNIK, VesnaANDERLUH, Gregor, KRENGEL, Ute. High-resolution crystal structures elucidate the molecular basis of cholera blood group dependence. PLOS pathogens, 2016, 12, doi: 10.1371/journal.ppat.1005567
  5. KRAŠEVEC, Nada, BENČINA, Mojca. Fungi gene expression systems : applications and advancements. V: SCHMOLL, Monika (ur.). Gene expression systems in fungi : advancements and applications, (Fungal biology). Cham: Springer, cop. 2016, 201-226. doi: 10.1007/978-3-319-27951-0_8
  6. OBRADOVIĆ, Davor, GAŠPERŠIČ, Rok, CASERMAN, Simon, LEONARDI, Adrijana, JAMNIK, Maja, PODLESEK, Zdravko, SEME, Katja, ANDERLUH, Gregor, KRIŽAJ, Igor, MAČEK, Peter, BUTALA, Matej. A cytolethal distending toxin variant from Aggregatibacter actinomycetemcomitans with an aberrant CdtB that lacks the conserved catalytic histidine 160. PloS one, 2016, 11:1-16, doi: 10.1371/journal.pone.0159231
  7. PODOBNIK, Marjetka, SAVORY, Peter, ROJKO, NejcKISOVEC, Matic, WOOD, Neil, HAMBLEY, Richard, PUGH, Jonathan, WALLACE, E. Jayne, MCNEILL, Luke, BRUCE, Mark, LIKO, Idlir, ALLISON, Timothy M., MEHMOOD, Shahid, YILMAZ, Neval, KOBAYASHI, Toshihide, GILBERT, Robert J., ROBINSON, Carol V., JAYASINGHE, Lakmal, ANDERLUH, Gregor. Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly. Nature communications, 2016, 7, doi: 10.1038/ncomms11598
  8. PODOBNIK, MarjetkaKRAŠEVEC, NadaBEDINA ZAVEC, ApolonijaNANEH, OmarFLAŠKER, AjdaCASERMAN, SimonHODNIK, VesnaANDERLUH, Gregor. How to study protein-protein interactions. Acta chimica slovenica, 2016, 63, doi: 10.17344/acsi.2016.2419
  9. PREVC, Ajda, BEDINA ZAVEC, Apolonija, ČEMAŽAR, Maja, KLOBOVES-PREVODNIK, Veronika, ŠTIMAC, Monika, TODOROVIĆ, Vesna, STROJAN, Primož, SERŠA, Gregor. Bystander effect induced by electroporation is possibly mediated by microvesicles and dependent on pulse amplitude, repetition frequency and cell type. The journal of membrane biology, 2016, doi: 10.1007/s00232-016-9915-0
  10. RUAN, Yi, REZELJ, SašaBEDINA ZAVEC, ApolonijaANDERLUH, Gregor, SCHEURING, Simon. Listeriolysin O membrane damaging activity involves arc formation and lineaction -- implication for Listeria monocytogenes escape from phagocytic vacuole. PLOS pathogens, 2016, 12, doi: 10.1371/journal.ppat.1005597
  11. SKOČAJ, Matej, YU, Yang, GRUNDNER, Maja, RESNIK, Nataša, BEDINA ZAVEC, Apolonija, LEONARDI, Adrijana, KRIŽAJ, Igor, GUELLA, Graziano, MAČEK, Peter, ERDANI-KREFT, Mateja, FRANGEŽ, Robert, VERANIČ, Peter, SEPČIĆ, Kristina. Characterisation of plasmalemmal shedding of vesicles induced by the cholesterol/ sphingomyelin binding protein, ostreolysin A-mCherry. Biochimica et biophysica acta, Biomembranes, 2016, doi: 10.1016/j.bbamem.2016.08.015
  12. WACKLIN, Hanna P., BAKRAČ, Biserka, MOULIN, Martina, ROJKO, Nejc, HAERTLEIN, Michael, FORSYTH, Trevor, ANDERLUH, Gregor, NORTON, Raymond S. Neutron reflection study of the interaction of the eukaryotic pore-forming actinoporin equinatoxin II with lipid membranes reveals intermediate states in pore formation. Biochimica et biophysica acta, Biomembranes, 2016, vol:640-652, doi: 10.1016/j.bbamem.2015.12.019
  13. ZADRAVEC, Petra, MAREČKOVÁ, Lucie, PETROKOVÁ, Hana, HODNIK, Vesna, PERIŠIĆ, Milica, ANDERLUH, Gregor, ŠTRUKELJ, Borut, MALÝ, Petr, BERLEC, Aleš. Development of recombinant Lactococcus lactis displaying albumin-binding domain variants against Shiga toxin 1 B subunit. PloS one, 2016, 11, doi: 10.1371/journal.pone.0162625

2015

  1. YÁÑEZ-MÓ, María, SILJANDER, Pia R.-M., ANDREU, Zoraida, BEDINA ZAVEC, Apolonija, BORRÀS, Francesc E., BUZAS, Edit I., BUZAS, Krisztina, CASAL, Enriqueta, CAPPELLO, Francesco, CARVALHO, Joana, KRALJ-IGLIČ, Veronika, MANČEK KEBER, Mateja, ŠTUKELJ, Roman, et al. Biological properties of extracellular vesicles and their physiological functions. Journal of extracellular vesicles, doi: 10.3402/jev.v4.27066
  2. BERNE, Sabina, KOVAČIČ, Lidija, SOVA, Matej, KRAŠEVEC, Nada, GOBEC, Stanislav, KRIŽAJ, Igor, KOMEL, Radovan. Benzoic acid derivatives with improved antifungal activity: design, synthesis, structure-activity relationship (SAR) and CYP53 docking studies. Bioorganic & Medicinal Chemistry, 2015, doi: 10.1016/j.bmc.2015.06.042
  3. CAJNKO, Miša Mojca, MARUŠIČ, Maja, KISOVEC, MaticROJKO, Nejc, BENČINA, Mojca, CASERMAN, SimonANDERLUH, Gregor. Listeriolysin O affects the permeability of Caco-2 monolayer in a pore-dependent and Ca [sup] 2+-independent manner. PloS one, 2015, 10:e0130471. doi: 10.1371/journal.pone.0130471
  4. ČEPIN, Marjeta, HRIBAR, Gorazd, CASERMAN, Simon, CRNJAK OREL, Zorica. Morphological impact of zinc oxide particles on the antibacterial activity and human epithelia toxicity. Materials science & engineering. C, Biomimetic materials, sensors and systems, 2015, 52, doi: 10.1016/j.msec.2015.03.053
  5. FELICIJAN, Mateja, NOVAK, Metka, KRAŠEVEC, Nada, URBANEK KRAJNC, Andreja. Antioxidant defences of Norway spruce bark against bark beetles and its associated blue-stain fungus. Agricultura, 2015, 12:1-2, doi: 10.1515/agricultura-2016-0002
  6. MAKINO, Asami, ABE, Mitsuhiro, MURATE, Motohide, INABA, Takehiko, YILMAZ, Neval, HULLIN-MATSUDA, Francoise, KISHIMOTO, Takuma, SCHIEBER, Nicole L., TAGUCHI, Tomohiko, ARAI, Hiroyuki, ANDERLUH, Gregor, PARTON, Robert G., KOBAYASHI, Toshihide. Visualization of the heterogeneous membrane distribution of sphingomyelin associated with cytokinesis, cell polarity, and sphingolipidosis. The FASEB journal, 2015, 29, doi: 10.1096/fj.13-247585
  7. MATANGE, Nishad, PODOBNIK, Marjetka, VISWESWARIAH, Sandhya S. Metallophosphoesterases : structural fidelity with functional promiscuity. Biochemical journal, 2015, 467, doi: 10.1042/BJ20150028
  8. METKAR, Sunil, MARCHIORETTO, Marta, ANTONINI, Valeria, LUNELLI, Lorenzo, WANG, Baikun, GILBERT, Robert J., ANDERLUH, Gregor, ROTH, R., POOGA, Margus, PARDO, Julian, HEUSER, J. E., DALLA SERRA, Mauro, FROELICH, Christopher J. Perforin oligomers form arcs in cellular membranes : a locus for intracellular delivery of granzymes. Cell death and differentiation, 2015, 22, doi: 10.1038/cdd.2014.110
  9. MIKLAVIČ, Špela, KOGOVŠEK, Polona, HODNIK, Vesna, KOROŠEC, Jernej, KLADNIK, Aleš, ANDERLUH, Gregor, GUTIERREZ-AGUIRRE, Ion, MAČEK, Peter, BUTALA, Matej. The Pseudomonas aeruginosa RhlR-controlled aegerolysin RahU is a low-affinity rhamnolipid-binding protein. FEMS microbiology letters, 2015, doi: 10.1093/femsle/fnv069
  10. NANEH, OmarBEDINA ZAVEC, Apolonija, PAHOVNIK, David, ŽAGAR, Ema, GILBERT, Robert J., KRIŽAJ, Igor, ANDERLUH, Gregor. An optimized protocol for expression and purification of murine perforin in insect cells. Journal of Immunological Methods, 2015, doi: 10.1016/j.jim.2015.07.007.
  11. NOVAK, Maruša, KRAŠEVEC, Nada, SKOČAJ, Matej, MAČEK, Peter, ANDERLUH, Gregor, SEPČIĆ, Kristina. Fungal aegerolysin-like proteins : distribution, activities, and applications. Applied microbiology and biotechnology, 2015, 99, doi: 10.1007/s00253-014-6239-9
  12. PODOBNIK, Marjetka, MARCHIORETTO, Marta, ZANETTI, Manuela, BAVDEK, Andrej, KISOVEC, MaticCAJNKO, Miša Mojca, LUNELLI, Lorenzo, DALLA SERRA, Mauro, ANDERLUH, Gregor. Plasticity of listeriolysin O pores and its regulation by pH and unique histidine. Scientific reports, 2015, 5:1-10, ilustr. doi: 10.1038/srep09623
  13. ROJKO, NejcANDERLUH, Gregor. How lipid membranes affect pore forming toxin activity. Accounts of chemical research, 2015, 48:3073-3079. doi: 10.1021/acs.accounts.5b00403.
  14. WEBER, Daniel K., YAO, Shenggen, ROJKO, NejcANDERLUH, Gregor, LYBRAND, Terry P., DOWNTON, Matthew T., WAGNER, John, SEPAROVIC, Frances. Characterization of the Lipid-Binding Site of Equinatoxin II by NMR and Molecular Dynamics Simulation. Biophysical journal, 2015, 108:1987-1996. doi: 10.1016/j.bpj.2015.03.024

2014

  1. ALIBEGOVIĆ, Armin, BALAŽIC, Jože, PETROVIČ, Danijel, HRIBAR, Gorazd, BLAGUS, Rok, DROBNIČ, Matej. Viability of human articular chondrocytes harvested postmortem : changes with time and temperature of in vitro culture conditions. Journal of forensic sciences, 2014, 58:325-332, doi: 10.1111/1556-4029.12330
  2. ANDERLUH, GregorKISOVEC, MaticKRAŠEVEC, Nada, GILBERT, Robert J. Distribution of MACPF/CDC proteins. V: ANDERLUH, Gregor (ur.), GILBERT, Robert J. (ur.). MACPF/CDC proteins - agents of defence, attack and invasion, (Subcellular biochemistry, vol. 80). Dordrecht: Springer, cop. 2014, 7-30, doi: 10.1007/978-94-017-8881-6_2
  3. Baker MA, Rojko N, Cronin B, Anderluh G, Wallace MI. Photobleaching reveals heterogeneous stoichiometry for equinatoxin II oligomers. ChemBioChem, 2014, 15:2139–2145, doi: 10.1002/cbic.201300799
  4. BEDINA ZAVEC, Apolonija, OTA, Ajda, ZUPANČIČ, TinaKOMEL, Radovan, POKLAR ULRIH, Nataša, LIOVIĆ, Mirjana. Archaeosomes can efficiently deliver different types of cargo into epithelial cells grown in vitroJournal of biotechnology, 2014, doi: 10.1016/j.jbiotec.2014.09.015.
  5. CAJNKO, Miša Mojca, MIKELJ, Miha, TURK, Tom, PODOBNIK, MarjetkaANDERLUH, Gregor. Membrane interactions and cellular effects of MACPF/CDC proteins. V: ANDERLUH, Gregor (ur.), GILBERT, Robert J. (ur.). MACPF/CDC proteins - agents of defence, attack and invasion, (Subcellular biochemistry, vol. 80). Dordrecht: Springer, cop. 2014, 119-144, doi: 10.1007/978-94-017-8881-6_7.
  6. CONDON, Bradford J., WU, Dongliang, KRAŠEVEC, Nada, HORWITZ, Benjamin A., TURGEON, B. Gillian. Comparative genomics of Cochliobolus phytopathogens. V: DEAN, Ralph A. (ur.). Genomics of plant-associated fungi : monocot pathogens. Berlin; Heidelberg: Springer, cop. 2014, 41-67, doi: 10.1007/978-3-662-44053-7_2.
  7. Gilbert RJC, Dalla Serra M, Froelich CJ, Wallace MI, ANDERLUH G. Membrane pore formation at protein–lipid interfaces. Trends in Biochemichal Sciences, 201439:510-516. doi: http://dx.doi.org/10.1016/j.tibs.2014.09.002
  8. GODINIĆ MIKULČIĆ, Vlatka, JARIĆ, Jelena, GREBER, Basil J., FRANKE, Vedran, HODNIK, Vesna, ANDERLUH, Gregor, BAN, Nenad, WEYGAND-DURAŠEVIĆ, Ivana. Archaeal aminoacyl-tRNA synthetases interact with the ribosome to recycle tRNAs. Nucleic acids research, 2014, 42:5191-5201, doi: 10.1093/nar/gku164.
  9. GUTIERREZ-AGUIRRE, Ion, HODNIK, Vesna, GLAIS, Laurent, RUPAR, Matevž, JACQUOT, Emmanuel, ANDERLUH, Gregor, RAVNIKAR, Maja. Surface plasmon resonance for monitoring the interaction of Potato virus Y with monoclonal antibodies. Analytical biochemistry, 2014, 447:74-81, doi: 10.1016/j.ab.2013.10.032.
  10. Hudler P, Kocevar N, KOMEL R. Proteomic approaches in biomarker discovery: new perspectives in cancer diagnostics. The Scientific World Journal, 2014, doi:  10.1155/2014/260348
  11. JALEN, Špela, SMILOVIĆ, Vanja, FIDLER, Katarina, PODOBNIK, Barbara, MARUŠIĆ, MajaKOMEL, Radovan, GABERC-POREKAR, Vladka, JEVŠEVAR, Simona. New assay for quantification of PEGylated proteins during in vitro permeability studies. Acta chimica slovenica, 2014, 61:615-622
  12. JAWALLAPERSAND, Poojah, MASHELE, Samson Sitheni, KOVAČIČ, Lidija, STOJAN, Jure, KOMEL, Radovan, BABU, Suresh P., KRAŠEVEC, Nada, SYED, Khajamohiddin. Cytochrome P450 monooxygenase CYP53 family in fungi : comparative structural and evolutionary analysis and its role as a common alternative anti-fungal drug target. PloS one, 2014, 9:1-15, e107209, doi: 10.1371/journal.pone.0107209.
  13. KOČEVAR, Nina, FRKOVIĆ-GRAZIO, Snježana, KOMEL, Radovan. Two-dimensional gel electrophoresis of gastric tissue in an alkaline pH range. Proteomics, 2014, 14:311-321, doi: 10.1002/pmic.201200574.
  14. KOROŠEC, Branka, SOVA, Matej, TURK, Samo, KRAŠEVEC, NadaNOVAK, MetkaLAH, Ljerka, STOJAN, Jure, PODOBNIK, Barbara, BERNE, Sabina, ZUPANEC, Neja, BUNC, Marko, GOBEC, Stanislav, KOMEL, Radovan. Antifungal activity of cinnamic acid derivatives involves inhibition of benzoate 4-hydroxylase (CYP53). Journal of applied microbiology, 2014, 116:955-966, doi: 10.1111/jam.1241.
  15. Kostan J, Salzer U, Orlova A, Törö I, Hodnik V, Senju Y, Zou J, Schreiner C, Steiner J, Meriläinen J, Nikki M, Virtanen I, Carugo O, Rappsilber J, Lappalainen P, Lehto VP, Anderluh G, Egelman EH, Djinović-Carugo K. Direct interaction of actin filaments with F-BAR protein pacsin2. EMBO reports, 2014 doi: 10.15252/embr.201439267
  16. KRAŠEVEC, NadaMILUNOVIĆ, Tatjana, ANŽUR-LASNIK, Marija, LUKANČIČ, Irena, KOMEL, Radovan, GABERC-POREKAR, Vladka. Human granulocyte colony stimulating factor (G-CSF) produced in the filamentous fungus Aspergillus nigerActa chimica slovenica, 2014, 61:709-717
  17. LAZAR, Ana, COLL RIUS, Anna, DOBNIK, David, BAEBLER, Špela, BEDINA ZAVEC, Apolonija, ŽEL, Jana, GRUDEN, Kristina. Involvement of potato (Solanum tuberosum L.) MKK6 in response to Potato virus Y. PloS one, 2014, 9, doi: 10.1371/journal.pone.0104553
  18. MATANGE, Nishad, PODOBNIK, Marjetka, VISWESWARIAH, Sandhya S. The non-catalytic 'cap domain' of a mycobacterial metallophosphoesterase regulates its expression and localization in the cell. The Journal of biological chemistry, 2014, 289:22470-22481, doi: 10.1074/jbc.M114.578328
  19. MARUŠIĆ, Maja, DJURDJEVIČ, Ida, DRAŠLAR, Kazimir, CASERMAN, Simon. Calu-3 model under AIC and LCC conditions and application for protein permeability studies. Acta chimica slovenica, 2014, 61:100-109. http://acta.chem-soc.si/61/61-1-100.pdf
  20. NANEH, Omar, AVČIN, Tadej, BEDINA ZAVEC, Apolonija. Perforin and human diseases. V: ANDERLUH, Gregor (ur.), GILBERT, Robert J. (ur.). MACPF/CDC proteins - agents of defence, attack and invasion, (Subcellular biochemistry, 80). Dordrecht: Springer, cop. 2014, 221-239, doi: 10.1007/978-94-017-8881-6_11
  21. NOVAK, Metka, URBANEK KRAJNC, Andreja, LAH, LjerkaZUPANEC, NejaKRAŠEVEC, Nada, KRIŽMAN, Mitja, BOHLMANN, Joerg, KOMEL, Radovan. Low-density Ceratocystis polonica inoculation of Norway spruce (Picea abies) triggers accumulation of monoterpenes with antifungal properties. European journal of forest research. 2014, 133:573-583, doi: 10.1007/s10342-013-0772-4
  22. PODOBNIK, Marjetka, SIDDIQUI, Nida, REBOLJ, Katja, NAMBI, Subhalaxmi, MERZEL, Franci, VISWESWARIAH, Sandhya S. Allostery and conformational dynamics in cAMP-binding acyltransferases. The Journal of biological chemistry, 2014, 289:1588-16600, doi: 10.1074/jbc.M114.560086
  23. ROJKO, Nejc, CRONIN, Bríd, DANIAL, J. S. H, BAKER, M. A. B., ANDERLUH, Gregor, WALLACE, Mark I. Imaging the lipid-phase-dependent pore formation of Equinatoxin II in droplet interface bilayers. Biophysical journal, 2014, 106:1630-1637, doi: 10.1016/j.bpj.2013.11.4507
  24. SKOČAJ, Matej, RESNIK, Nataša, GRUNDNER, Maja, OTA, Katja, ROJKO, Nejc, HODNIK, Vesna, ANDERLUH, Gregor, SOBOTA, Andrzej, MAČEK, Peter, VERANIČ, Peter, SEPČIĆ, Kristina. Tracking cholesterol/sphingomyelin-rich membrane domains with the ostreolysin A-mCherry protein. PloS one, 2014, 9, 1-12, doi: 10.1371/journal.pone.0092783
  25. STRMECKI, Lana, HUDLER, Petra, BENEDIK-DOLNIČAR, Majda, KOMEL, Radovan. De novo mutation in DMD gene in a patient with combined hemophilia A and Duchenne muscular dystrophy. International journal of hematology, 2014, 99, 184-187, doi: 10.1007/s12185-013-1488-4
  26. SYED, Khajamohiddin, SHALE, Karabo, NAZIR, K. H. M. Nazmul Hussain, KRAŠEVEC, Nada, MASHELE, Samson Sitheni, PAGADALA, Nataraj Sekhar. Genome-wide identification, annotation and characterization of novel thermostable cytochrome P450 monooxygenases from the thermophilic biomass-degrading fungi Thielavia terrestris and Myceliophthora thermophila. Genes and genomics, 2014, 36:321-333, doi: 10.1007/s13258-013-0170-9
  27. URBANEK KRAJNC, Andreja, NOVAK, Metka, FELICIJAN, Mateja, KRAŠEVEC, Nada, LEŠNIK, Mario, ZUPANEC, NejaKOMEL, Radovan. Antioxidative response patterns of Norway spruce bark to low-density Ceratocystis polonica inoculation. Trees, 2014, 28:1145-1160, doi: 10.1007/s00468-014-1025-y
  28. WALTER, Beata, RUPNIK, Maja, HODNIK, Vesna, ANDERLUH, Gregor, DUPUY, Bruno, PAULIČ, Nejc, ŽGUR-BERTOK, Darja, BUTALA, Matej. The LexA regulated genes of the Clostridium difficile. BMC microbiology, 2014, 14:-20, doi: 10.1186/1471-2180-14-88
  29. ZUPANČIČ, Tina, STOJAN, Jure, LANE, Ellen Birgitte, KOMEL, RadovanBEDINA ZAVEC, ApolonijaLIOVIĆ, Mirjana. Intestinal cell barrier function in vitro is severely compromised by keratin 8 and 18 mutations identified in patients with inflammatory bowel disease. PloS one, 2014, 9, doi: 10.1371/journal.pone.0099398

2013

  1. BEDINA ZAVEC, Apolonija. Intrinsically disoredered proteins in replication process. V: STUART, David (ur.). The mechanisms of DNA replication. Rijeka: InTech, 2013, 169-189, doi: 10.5772/51673
  2. ČRNIGOJ, Miha, PODLESEK, Zdravko, ZORKO, Mateja, JERALA, Roman, ANDERLUH, Gregor, POKLAR ULRIH, Nataša. Interactions of archaeal chromatin proteins Alba1 and Alba2 with nucleic acids. PloS one, 2013, 8:1-12, doi: 10.1371/journal.pone.0058237
  3. GILBERT, Robert J., MIKELJ, Miha, DALLA SERRA, Mauro, FROELICH, Christopher J., ANDERLUH, Gregor. Effects of MACPF/CDC proteins on lipid membranes. Cell Mol Life Sci, 2013, 70:2083-2098, doi: 10.1007/s00018-012-1153-8
  4. HODNIK, Vesna, ANDERLUH, Gregor. Surface plasmon resonance for measuring interactions of proteins with lipid membranes. V: KLEINSCHMIDT, Jörg H. (ur.). Lipid-protein interactions : methods and protocols, (Methods in molecular biology (Clifton, N.J.), 974), (Methods in molecular biology (Clifton, N.J. Online), 974), (Springer protocols). New York [etc.]: Humana Press, cop. 2013, 23-36, doi: 10.1007/978-1-62703-275-9_2
  5. OTA, Katja, LEONARDI, Adrijana, MIKELJ, Miha, SKOČAJ, Matej, WOHLSCHLAGER, Therese, KÜNZLER, Markus, AEBI, Markus, NARAT, Mojca, KRIŽAJ, Igor, ANDERLUH, Gregor, SEPČIĆ, Kristina, MAČEK, Peter. Membrane cholesterol and sphingomyelin, and ostreolysin A are obligatory for pore-formation by a MACPF/CDC-like pore-forming protein, pleurotolysin B. Biochimie, 2013, 95:1855-1864, doi: 10.1016/j.biochi.2013.06.012
  6. KASTELIC, Damjana, SOLER, Nicolas, KOMEL, Radovan, POMPON, Denis. The Global Sequence Signature algorithm unveils a structural network surrounding heavy chain CDR3 Loop in Camelidae variable domains. Biochim. biophys. acta (G), 2013, 1830:3373-3381, doi: 10.1016/j.bbagen.2013.02.014
  7. KOČEVAR, Nina, HUDLER, Petra, KOMEL, Radovan. The progress of proteomic approaches in searching for cancer biomarkers. New biotechnology, 2013, 30:319-326, doi: 10.1016/j.nbt.2012.11.011
  8. KOVAČIČ, Lidija, PAULIČ, Nejc, LEONARDI, Adrijana, HODNIK, Vesna, ANDERLUH, Gregor, PODLESEK, Zdravko, ŽGUR-BERTOK, Darja, KRIŽAJ, Igor, BUTALA, Matej. Structural insight into LexARecA interaction. Nucleic acids research, 2013, 42:9901-9910, doi: 10.1093/nar/gkt744
  9. KUNSTELJ, Menči, FIDLER, Katarina, ŠKRAJNAR, Špela, KENIG, Maja, SMILOVIĆ, Vanja, KUSTERLE, Mateja, CASERMAN, Simon, ZORE, Irena, GABERC-POREKAR, Vladka, JEVŠEVAR, Simona. Cysteine-specific PEGylation of rhG-CSF via selenylsulfide bond. Bioconjug. chem., 2013, doi: 10.1021/bc3005232
  10. LAH, Ljerka, HARIDAS, Sajeet, BOHLMANN, Joerg, BREUIL, Colette. The cytochromes P450 of Grosmannia clavigera : genome organization, phylogeny, and expression in response to pine host chemicals. Fungal genet. biol., 2013, 50:72-81, doi: 10.1016/j.fgb.2012.10.002
  11. LAVENTIE, Benoît-Joseph, ANDERLUH, Gregor. Para-sulfonato-calix[n]arenes inhibit staphylococcal bicomponent leukotoxins by supramolecular interactions. Biochem. j. (Lond., 1984), 2013, 450:559-571, doi: 10.1042/BJ20121628 
  12. MARCHIORETTO, Marta, PODOBNIK, Marjetka, DALLA SERRA, Mauro, ANDERLUH, Gregor. What planar lipid membranes tell us about the pore-forming activity of cholesterol-dependent cytolysins. Biophysical Chemistry, 2013, doi: 10.1016/j.bpc.2013.06.015
  13. MARUŠIĆ, Maja, ZUPANČIČ, Tina, HRIBAR, Gorazd, KOMEL, Radovan, ANDERLUH, Gregor, CASERMAN, Simon. The Caco-2 cell culture model enables sensitive detection of enhanced protein permeability in the presence of N-decyl-[beta]-d-maltopyranoside. New biotechnology, 2013, 30:507-515, doi: 10.1016/j.nbt.2013.05.008
  14. MIKELJ, Miha, PRAPER, Tilen, DEMIČ, Rok, HODNIK, Vesna, TURK, Tom, ANDERLUH, Gregor. Electroformation of giant unilamellar vesicles from erythrocyte membranes under low-salt conditions. Analytical biochemistry, 2013, 435:174-180., doi: 10.1016/j.ab.2013.01.001
  15. NOVAK, Metka, URBANEK KRAJNC, Andreja, LAH, Ljerka, ZUPANEC, Neja, KRAŠEVEC, Nada, KRIŽMAN, Mitja, BOHLMANN, Joerg, KOMEL, Radovan. Low-density Ceratocystis polonica inoculation of Norway spruce (Picea abies) triggers accumulation of monoterpenes with antifungal properties. European journal of forest research, 2013, doi: 10.1007/s10342-013-0772-4
  16. OGOREVC, Eva, ŠTUKELJ, Roman, BEDINA ZAVEC, Apolonija, ŠUŠTAR, Vid, ŠIMUNDIĆ, Metka, KRALJ-IGLIČ, Veronika, JANŠA, Rado. A 32-month follow-up study of nanovesicle concentrations in blood from 12 patients with gastrointestinal stromal tumour treated with imatinib. Biochem Soc Trans, 2013, 41:303-308, doi: 10.1042/BST20120247
  17. OTA, Katja, LEONARDI, Adrijana, MIKELJ, Miha, SKOČAJ, Matej, WOHLSCHLAGER, Therese, KÜNZLER, Markus, AEBI, Markus, NARAT, Mojca, KRIŽAJ, Igor, ANDERLUH, Gregor, SEPČIĆ, Kristina, MAČEK, Peter. Membrane cholesterol and sphingomyelin, and ostreolysin A are obligatory for pore-formation by a MACPF/CDC-like pore-forming protein, pleurotolysin B. Biochimie, 2013, 95:1855-1864, doi: 10.1016/j.biochi.2013.06.012
  18. PACCEZ, Juliano D., VOGELSANG, Matjaž, PARKER, M. Iqbal, ZERBINI, Luiz F. The receptor tyrosine kinase Axl in cancer : biological functions and therapeutic implication. Int J Cancer. 2013,  1-41, doi: 10.1002/ijc.28246
  19. PETERNEL, Špela. Bacterial cell disruption : a crucial step in protein production. New biotechnology, 2013, 30:250-254, doi: 10.1016/j.nbt.2011.09.005
  20. ROJKO, Nejc, KRISTAN, Katarina, VIERO, Gabriella, ŽEROVNIK, Eva, MAČEK, Peter, DALLA SERRA, Mauro, ANDERLUH, Gregor. Membrane damage by an [alpha]-helical pore forming protein Equinatoxin II proceeds through succesion of ordered steps. The Journal of biological chemistry, 2013, 288:23704-23715, doi: 10.1074/jbc.M113.481572
  21. SKOČAJ, Matej, BAKRAČ, Biserka, KRIŽAJ, Igor, MAČEK, Peter, ANDERLUH, Gregor, SEPČIĆ, Kristina. The sensing of membrane microdomains based on pore-forming toxins. Curr. med. chem., 2013, 20:491-501, doi: 10.2174/092986713804910094
  22. ŠVAJGER, Urban, BRUS, Boris, TURK, Samo, SOVA, Matej, HODNIK, Vesna, ANDERLUH, Gregor, GOBEC, Stanislav. Novel toll-like receptor 4 (TLR4) antagonists identified by structure- and ligand-based virtual screening. European Journal of Medicinal Chemistry, 2013, 70:393-399., doi: 10.1016/j.ejmech.2013.10.019
  23. TLUČKOVÁ, Katarína, MARUŠIČ, Maja, TÓTHOVÁ, Petra, BAUER, Lubos, ŠKET, Primož, PLAVEC, Janez, VIGLASKY, Viktor. Human papillomavirus G-quadruplexes. Biochemistry, 2013, 52:7207-7216.
  24. VOGELSANG, Matjaž. (ured.). DNA alterations in Lynch Syndrome: Advances in molecular diagnosis and genetic counselling, 2013, New York: Springer, doi: 10.1007/978-94-007-6597-9
  25. WANG, Yabing, VOGELSANG, Matjaž, SCHÄFER, Georgia, MATEJCIC, Marco, PARKER, M. Iqbal. MicroRNA polymorphisms and environmental smoke exposure as risk factors for oesophageal squamous cell carcinoma. PloS one, 2013, 8:1-9, e78520., doi: 10.1371/journal.pone.0078520.

2012

  1. ANDERLUH, Gregor, ŽEROVNIK, Eva. (2012) Pore formation by human stefin B in its native and oligomeric states and the consequent amyloid induced toxicity. Front. mol. neurosci., vol. 5, str. 1-8.
  2. ANKO, Maja, MAJHENC, Janja, KOGEJ, Ksenija, SILLARD, Rannard, LANGEL, Ülo, ANDERLUH, Gregor, ZORKO, Matjaž. (2012) Influence of stearyl and trifluoromethylquinoline modifications of the cell penetrating peptide TP10 on its interaction with a lipid membrane. Biochim. biophys. acta, Biomembr., vol. 1818, iss. 3, str. 915-924.
  3. BAVDEK, Andrej, KOSTANJŠEK, Rok, ANTONINI, Valeria, LAKEY, Jeremy H., DALLA SERRA, Mauro, GILBERT, Robert J., ANDERLUH, Gregor. (2012) pH dependence of listeriolysin O aggregation and pore-forming ability. FEBS Journal, vol. 279, iss. 1, str. 126-141.
  4. BERNE S, PODOBNIK B, ZUPANEC N, NOVAK M, KRAŠEVEC N, TURK S, KOROŠEC B, LAH L, ŠULIGOJ E, STOJAN J, GOBEC S, KOMEL R. (2012) Virtual screening yields inhibitors of novel antifungal drug target, benzoate 4-monooxygenase. J Chem Inf Model. 52(11):3053-63.
  5. BRVAR, Matjaž, PERDIH, Andrej, HODNIK, Vesna, RENKO, Miha, ANDERLUH, Gregor, JERALA, Roman, ŠOLMAJER, Tomaž. (2012) In silico discovery and biophysical evaluation of novel 5-(2-hydroxybenzylidene) rhodanine inhibitors of DNA gyrase B. Bioorg. med. chem., vol. 20, iss. 8, str. 2572-2580.
  6. BRVAR, Matjaž, PERDIH, Andrej, RENKO, Miha, ANDERLUH, Gregor, TURK, Dušan, ŠOLMAJER, Tomaž. (2012) Structure-based discovery of substituted 4, 5`-bithiazoles as novel DNA gyrase inhibitors. J. Med. Chem., vol. 55, issue 14, str. 6413-6426.
  7. CONRADO, Robert J., LEBAR, Tina, TURNŠEK, Jernej, TOMŠIČ, Nejc, AVBELJ, Monika, GABER, Rok, KOPRIVNJAK, Tomaž, MORI, Jerneja, GLAVNIK, Vesna, VOVK, Irena, BENČINA, Mojca, HODNIK, Vesna, ANDERLUH, Gregor, JERALA, Roman. (2012) DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency. Nucleic acids res., vol. 40, no. 4, str. 1879-1889.
  8. DE COLIBUS, Luigi, SONNEN, Andreas F.- P., MORRIS, Keith J., SIEBERT, C. Alistair, ABRUSCI, Patrizia, PLITZKO, Jürgen, HODNIK, Vesna, LEIPPE, Matthias, VOLPI, Emanuela, ANDERLUH, Gregor, GILBERT, Robert J. (2012) Structures of lysenin reveal a shared evolutionary origin for pore-forming proteins and its mode of sphingomyelin recognition. Structure (Lond.), vol. 20, issue 9, str. 1498-1507.
  9. KAHN SA, BIASOLI D, GARCIA C, GERALDO LH, PONTES B, SOBRINHO M, FRAUCHES AC, ROMAO L, SOLETTI RC, ASSUNCAO FDOS S, TOVAR-MOLL F, DE SOUZA JM, LIMA FR, ANDERLUH G, MOURA-NETO V. (2012) Equinatoxin II potentiates temozolomide- and etoposide-induced glioblastoma cell death. Curr Top Med Chem, 12(9):2082-93.
  10. KOČEVAR, Nina, ODREMAN MACCHIOLI, Federico, VINDIGNI, Alessandro, FRKOVIĆ-GRAZIO, Snježana, KOMEL, Radovan. (2012) Proteomic analysis of gastric cancer and immunoblot validation of potential biomarkers. World J. Gastroenterol., Mar. 2012, vol. 18, iss. 11, str. 1216-1228.
  11. KOČEVAR N, HUDLER P, KOMEL R. (2012) The progress of proteomic approaches in searching for cancer biomarkers. N Biotechnol. doi:pii: S1871-6784(12)00868-0. 10.1016/j.nbt.2012.11.011
  12. LIOVIĆ, Mirjana, OZIR, Mateja, BEDINA ZAVEC, Apolonija, PETERNEL, Špela, KOMEL, Radovan, ZUPANČIČ, Tina. (2012) Inclusion bodies as potential vehicles for recombinant protein delivery into epithelial cells. Microb Cell Fact, vol. 11, iss. 1, str. [1-14].
  13. MATTIAZZI, Mojca, SUN, Yidi, WOLINSKI, Heimo, BAVDEK, Andrej, PETAN, Toni, ANDERLUH, Gregor, KOHLWEIN, Sepp D., DRUBIN, David, KRIŽAJ, Igor, PETROVIČ, Uroš. (2012) A neurotoxic phospholipase A [sub] 2 impairs yeast amphiphysin activity and reduces endocytosis. PloS one, vol. 7, iss. 7, str. 1-13
  14. MILUNOVIĆ, Tatjana, KUNSTELJ, Menči, FIDLER, Katarina, ANDERLUH, Gregor, GABERC-POREKAR, Vladka. (2012) Coupling purification and on-column PEGylation of TNF-[alfa] analogue. Anal. biochem., str. [1-9].
  15. POPOVIĆ, Matija, ZLATEV, Ventsislav, HODNIK, Vesna, ANDERLUH, Gregor, FELLI, Isabella C., PONGOR, Sándor, PINTAR, Alessandro. (2012) Flexibility of the PDZ-binding motif in the micelle-bound form of Jagged-1  cytoplasmic tail. Biochim. biophys. acta, Biomembr., vol. 1818, iss. 7, str. 1706-1716.
  16. ŠKEDELJ, Veronika, ARSOVSKA, Emilija, TOMAŠIĆ, Tihomir, KROFLIČ, Ana, HODNIK, Vesna, HRAST, Martina, BEŠTER-ROGAČ, Marija, ANDERLUH, Gregor, GOBEC, Stanislav, BOSTOCK, Julieanne M., CHOPRA, Ian, O'NEILL, Alex, RANDALL, Christopher, ZEGA, Anamarija. (2012)
    6-arylpyrido[2,3-d]pyrimidines as novel ATP-competitive inhibitors of bacterial D-alanine: D-alanine ligase. PloS one, vol. 7, no. 8, str. e39922.
  17. VOGELSANG, Matjaž, WANG, Yabing, VEBER, Nika, MWAPAGHA, Lamech M., IQBAL PARKER, M. (2012) The cumulative effects of polymorphisms in the DNA mismatch repair genes and tobacco smoking in oesophageal cancer risk. PloS one, vol. 7, iss. 5, str. e36962-1-e36962-10.
  18. YACHI, Rieko, UCHIDA, Yasunori, BALAKRISHNA, Bhat Hema, ANDERLUH, Gregor, KOBAYASHI, Toshihide, TAGUCHI, Tomohiko, ARAI, Hiroyuki. (2012) Subcellular localization of sphingomyelin revealed by two toxin-based probes in mammalian cells. Genes cells (Online), , vol. 17, iss. 8, str. 720-727.
  19. ZUPANČIČ, Tina, OZIR, Mateja, TÖRMÄ, Hans, KOMEL, Radovan, LIOVIĆ, Mirjana. Keratinocyte-based cell assays : their potential pitfalls. Archives for dermatological research, ISSN 0340-3696, 2012, vol. 304, iss. 9, str. 765-768

2011

  1. ABRAHAMS, Jan-Pieter, APWEILER, Rolf, BALLING, Rudi, PODOBNIK, Marjetka (2011) 4D biology for health and disease : workshop report. New biotechnology 28, 4, 291-293.
  2. DERMOL, Urška, JANARDAN, Vishnu, TYAGI, Richa, VISWESWARIAH, Sandhya S., PODOBNIK, Marjetka (2011) Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome. J. Mol. Biol. 412, 481-494.
  3. FIDLER, Katarina, JEVŠEVAR, Simona, MILUNOVIĆ, Tatjana, ŠKRAJNAR, Špela, PREMZL, Aleš, KUNSTELJ, Menči, ZORE, Irena, PODOBNIK, Barbara, KUSTERLE, Mateja, CASERMAN, Simon, KENIG, Maja, SMILOVIĆ, Vanja, GABERC-POREKAR, Vladka (2011) The characterization and potential use of G-CSF dimers and their pegylated conjugates. Acta chim. slov. 58, 1, 1-8.
  4. HRIBAR, Gorazd, ŽNIDARŠIČ, Andrej, BELE, Marjan, MAVER, Uroš, CASERMAN, Simon, GABERŠČEK, Miran, GABERC-POREKAR, Vladka (2011) Zinc-phosphate nanoparticles with reversibly attached TNF- [alfa] analogs : an interesting concept for potential use in active immunotherapy. J. Nanopart. Res. 13, 3019-3032.
  5. LAH, Ljerka, PODOBNIK, Barbara, NOVAK, Metka, KOROŠEC, Branka, BERNE, Sabina, VOGELSANG, Matjaž, KRAŠEVEC, Nada, ZUPANEC, Neja, STOJAN, Jure, BOHLMANN, Joerg, KOMEL, Radovan (2011) The versatility of the fungal cytochrome P450 monooxygenase system is instrumental in xenobiotic detoxification. Mol. Microbiol. 85, 1374-1389.
  6. MARUŠIČ Maja, JERAS Matjaž (2011): Matične celice iz zobnega in obzobnega tkiva ter njihova uporaba v regenerativnem zobozdravstvu (Stem cells from dental and periodontal tissue and their possible application in regenerative dentistry). Farm. Vestn., 62, 1,26-30.
  7. PETERNEL, Špela, KOMEL, Radovan (2011) Active protein aggregates produced in Escherichia coli. Int. J. Mol. Sci. 12, 8275-8287.
  8. STARČEVIĆ, Štefan, KOCBEK, Petra, HRIBAR, Gorazd, LANIŠNIK-RIŽNER, Tea, GOBEC, Stanislav (2011) Biochemical and biological evaluation of novel potent coumarin inhibitor of 17ß-HSD type 1. Chem.-Biol. Interact. 191, 60-65.
  9. ŠUŠTAR, Vid, BEDINA ZAVEC, Apolonija, ŠTUKELJ, Roman, FRANK, Mojca, BOBOJEVIĆ, Goran, JANŠA, Rado, OGOREVC, Eva, KRULJC, Peter, MAM, Keriya, ŠIMUNIČ, Boštjan, MANČEK KEBER, Mateja, JERALA, Roman, ROZMAN, Blaž, VERANIČ, Peter, HÄGERSTRAND, Henry, KRALJ-IGLIČ, Veronika (2011) Nanoparticles isolated from blood : a reflection of vesiculability of blood cells during the isolation process. Int. J. Nanomedicine 6, 2737-2748.
  10. ŠUŠTAR, Vid, BEDINA ZAVEC, Apolonija, ŠTUKELJ, Roman, FRANK, Mojca, OGOREVC, Eva, JANŠA, Rado, KERIYA, Mam, VERANIČ, Peter, KRALJ-IGLIČ, Veronika (2011) Post-prandial rise of microvesicles in peripheral blood of healthy human donors. Lipids in Health and Disease 10, 47.
  11. VOGELSANG, Matjaž, KOMEL, Radovan (2011) Non-truncating hMLH1 variants identified in Slovenian gastric cancer patients are not associated with Lynch syndrome : a functional analysis report. Familial cancer  10, 2, 255-263.

2010

  1. HROVAT, Alenka, BEDINA ZAVEC, Apolonija, POGAČNIK, Azra, FRANGEŽ, Robert, VRECL, Milka (2010) Establishing and functional characterization of an HEK-293 cell line expressing autofluorescently tagged beta-actin (pEYFP-actin) and the neurokinin type 1 receptor (NK1-R). Cell. Mol. Biol. Lett. 15, 1, 55-69.
  2. JEVŠEVAR, Simona, KUNSTELJ, Menči, GABERC-POREKAR, Vladka (2010) PEGylation of therapeutic proteins. Biotechnol. j. 1, 5, 113-128.
  3. PETERNEL, Špela, KOMEL, Radovan (2010) Isolation of biologically active nanomaterial (inclusion bodies) from bacterial cells. Microb Cell Fact 9, 66 [1-16].
  4. PETERNEL, Špela, LIOVIĆ, Mirjana (2010) Production of recombinant proteins in bacteria : the inclusion bodies formation and their use in biomedicine. Recent patents on biomedical engineering, 3, 3, 153-161.
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