Odseki

2009

1. BENČINA, Mojca, BAGAR, Tanja, LAH, Ljerka, KRAŠEVEC, Nada (2009) A comparative genomic analysis of calcium and proton signaling/homeostasis in Aspergillus species. Fungal genet. biol.  46, 1, S93-S104.
2. BERNE, Sabina, LAH, Ljerka, SEPČIĆ, Kristina (2009) Aegerolysins : structure, function, and putative biological role. Protein sci. 18, 4, 694-706.
3. CAPUDER, Maja, ŠOLAR, Tina, BENČINA, Mojca, LEGIŠA, Matic (2009) Highly active, citrate inhibition resistant form of Aspergillus niger 6-phosphofructo-1-kinase encoded by a modified pfkA gene. J. biotechnol. 144, 1, 51-57
4. CASERMAN, Simon, KUSTERLE, Mateja, KUNSTELJ, Menči, MILUNOVIĆ, Tatjana, SCHIEFERMEIER, Mark, JEVŠEVAR, Simona, GABERC-POREKAR, Vladka (2009) Correlations between in vitro potency of polyethylene glycol-protein conjugates and their chromatographic behaviour. Anal. biochem. 389, 1, 27-31.
5. DRAŠKOVIČ, Petra, PODOBNIK, Marjetka (2009) Raznolikost in biološki pomen fosforiliranih derivatov inozitola = Diversity and biological significance of phosphorylated derivatives of inositol : Celična terapija z regulatornimi limfociti T - celice kot zdravila. Farm. vestn. 60, 4, 195-200.
6. JALEN, Špela, PETERNEL, Špela, FIDLER, Katarina, JEVŠEVAR, Simona (2009) Uporabnost bakterijskih beljakovinskih agregatov v farmaciji = Applicability of bacterial protein aggregates in pharmaceutical industry. Farm. vestn. 60, 4, 201-204.
7. JUNKAR, Ita, ŠUŠTAR, Vid, FRANK, Mojca, JANŠA, Vid, BEDINA ZAVEC, Apolonija, ROZMAN, Blaž, MOZETIČ, Miran, HÄGERSTRAND, Henry, KRALJ-IGLIČ, Veronika (2009) Blood and sinovial microparticles as revealed by atomic force and scanning electron microscope. The open autoimmunity journal  1, 50-58.
8. KELLY, Diane L., KRAŠEVEC, Nada, MULLINS, Jonathan, NELSON, Dennis R. (2009) The CYPome (Cytochrome P450 complement) of Aspergillus nidulans. Fungal genet. biol. 46, 1, S53-S61.
9. NOVAK, Saša, MAVER, Uroš, PETERNEL, Špela, VENTURINI, Peter, BELE, Marjan, GABERŠČEK, Miran (2009) Electrophoretic deposition as a tool for separation of protein inclusion bodies from host bacteria in suspension. Colloids surf., A Physicochem. eng. asp. 340, 1/3, 155-160.
10. PETERNEL, Špela, GABERC-POREKAR, Vladka, KOMEL, Radovan (2009) Bacterial growth conditions affect quality of GFP expressed inside inclusion bodies. Acta chim. slov. 56, 4, 860-867.
11. PETERNEL, Špela, GABROVŠEK, Karin, GOGALA, Nada, REGVAR, Marjana (2009) In vitro propagation of European aspen (Populus tremula L.) from axillary buds via organogenesis. Sci. hortic. 121, 1, 109-112.
12. PODOBNIK, Marjetka, TYAGI, Richa, MATANGE, Nishad, DERMOL, Urška, GUPTA, Arun K., MATTOO, Rohini, SESHADRI, Kothandaraman, VISWESWARIAH, Sandhya S (2009) A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability. J Biol Chem 284, 47, 32846-32857.
13. ŠKRAJNAR, Špela, ANŽUR-LASNIK, Marija, BEDINA ZAVEC, Apolonija (2009) A flow cytometric method for determination of the blood neutrophil fraction in rats. Journal of the American Association for Laboratory Animal Science 48, 2, 152-156.
14. VOGELSANG, Matjaž, COMINO, Aleksandra, ZUPANEC, Neja, HUDLER, Petra, KOMEL, Radovan (2009) Assessing pathogenicity of MLH1 variants by co-expression of human MLH1 and PMS2 genes in yeast. BMC Cancer 9, 382, 1-9.
15. WORTMAN, Jennifer Russo, BENČINA, Mojca, KRAŠEVEC, Nada (2009) The 2008 update of the Aspergillus nidulans genome annotation : a community effort. Fungal genet. biol.1, 46, S2-S13.

2008

1. BEDINA ZAVEC, Apolonija, COMINO, Aleksandra, LENASSI, Metka, KOMEL, Radovan (2008) Ecm11 protein of yeast Saccharomyces cerevisiae ECM11 is regulated by sumoylation during meiosis. FEMS yeast research. 8, 1, 64-70.
2. BELE, Marjan, HRIBAR, Gorazd, ČAMPELJ, Stanislav, MAKOVEC, Darko, GABERC-POREKAR, Vladka, ZORKO, Milena, GABERŠČEK, Miran, JAMNIK, Janko, VENTURINI, Peter (2008) Zinc-decorated silica-coated magnetic nanoparticles for protein binding and controlled release. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences  867, 1, 160-164.
3. BERNE, Sabina, LAH, Ljerka, KOROŠEC, Branka, KRAŠEVEC, Nada, KOMEL, Radovan (2008) Progesterone-induced gene expression profile of the filamentous fungus Cochliobolus lunatus. Acta chim. slov. 55, 1, 93-100.
4. DRAŠKOVIČ, Petra, SAIARDI, Adolfo, BHANDARI, Rashna, BURTON, Adam, ILC, Gregor, KOVAČEVIČ, Miroslav, SNYDER, Solomon H., PODOBNIK, Marjetka (2008) Inositol hexakisphosphate kinase products contain diphosphate and triphosphate groups. Chemistry & Biology 15, 3, 274-286.
5. GABERC-POREKAR, Vladka, ZORE, Irena, PODOBNIK, Barbara, MENART, Viktor (2008) Obstacles and pitfalls on the PEGylation of therapeutic proteins. Curr. opin. drug discov. dev. 11, 2, 242-250.
6. HRIBAR, Gorazd, SMILOVIĆ, Vanja, LENASSI ZUPAN, Ana, GABERC-POREKAR, Vladka (2008) [beta]-lactamase reporter system for selecting high-producing yeast clones. BioTechniques  44, 4, 477-483.
7. KENIG, Maja, GABERC-POREKAR, Vladka, FONDA, Irena, MENART, Viktor (2008) Identification of the heparin-binding domain of TNF-alpha and its use for efficient TNF-alpha purification by heparin-Sepharose affinity chromatography. Journal of chromatography. B, Analytical technologies in the biomedical and life sciences B 867, 1, 119-125.
8. KRAŠEVEC, Nada, KOMEL, Radovan (2008) Influence of primary gene structure on secretion of recombinant TNF[alpha] from Aspergillus niger. Acta chim. slov. 55, 2, 350-358.
9. KUSTERLE, Mateja, JEVŠEVAR, Simona, GABERC-POREKAR, Vladka (2008) Size of pegylated protein conjugates studied by various methods. Acta chim. slov. 55,  3, 594-601.
10. LAH, Ljerka, KRAŠEVEC, Nada, TRONTELJ, Peter, KOMEL, Radovan (2008) High diversity and complex evolution of fungal cytochrome P450 reductase : cytochrome P450 systems. Fungal genet. biol. 4, 45, 446-458.
11. NIKITIN, Dmitri, TOSATO, Valentina, BEDINA ZAVEC, Apolonija, BRUSCHI, Carlo V. (2008) Cellular and molecular effects of nonreciprocal chromosome translocations in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A., 105, 28, 9703-9708.
12. NOVAK ŠTAGOJ, Mateja, KOMEL, Radovan (2008) The GAL induction response in yeasts with impaired galactokinase Gal1p activity. World j. microbiol. biotechnol. 10,  24, 2159-2166.
13. PETERNEL, Špela, BELE, Marjan, GABERC-POREKAR, Vladka, KOMEL, Radovan (2008) Inclusion bodies contraction with implications in biotechnology. Acta chim. slov. 55, 3, 608-612.
14. PETERNEL, Špela, GRDADOLNIK, Jože, GABERC-POREKAR, Vladka, KOMEL, Radovan (2008) Engineering inclusion bodies for non denaturing extraction of functional proteins. Microb Cell Fact 7, 1-32, art. 34.
15. PETERNEL, Špela, JEVŠEVAR, Simona, BELE, Marjan, GABERC-POREKAR, Vladka, MENART, Viktor (2008) New properties of inclusion bodies with implications for biotechnology. Biotechnol. appl. biochem. 49, 239-246.
16. PODOBNIK, Barbara, STOJAN, Jure, LAH, Ljerka, KRAŠEVEC, Nada, SELIŠKAR, Matej, LANIŠNIK-RIŽNER, Tea, ROZMAN, Damjana, KOMEL, Radovan (2008) CYP53A15 of Cochiobolus lunatus, a target for natural antifungal compounds. J. med. chem.12, 51, 3480-3486
17. ŠKULJ, Mihaela, OKRŠLAR, Veronika, JALEN, Špela, JEVŠEVAR, Simona, SLANC, Petra, ŠTRUKELJ, Borut, MENART, Viktor (2008) Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes. Microb Cell Fact 6, 7, 1-12.
18. SMILOVIĆ, Vanja, CASERMAN, Simon, FONDA, Irena, GABERC-POREKAR, Vladka, MENART, Viktor (2008) A novel reporter gene assay for interferons based on CHO-K1 cells. J. immunol. methods. 333, 1/2, 192-196.

2007

1. CASERMAN, Simon, MENART, Viktor, DAS, Rose Gaines, WILLIAMS, Stella, MEAGER, Anthony (2007) Thermal stability of the WHO international standard of interferon alpha 2b (IFN-[alpha]2b) : application of new reporter gene assay for IFN-[alpha]2b potency determinations. J. immunol. methods. 319, 1, 6-12.
2. JEVŠEVAR, Simona, PALČIČ, Jernej, JALEN, Špela, PAVKO, Aleksander (2007) Influence of the media composition on behavior of pET expression systems. Acta chim. slov. 54, 2, 360-365
3. SHENOY, Avinash R., CAPUDER, Maja, DRAŠKOVIČ, Petra, LAMBA, Doriano, VISWESWARIAH, Sandhya S., PODOBNIK, Marjetka (2007) Structural and biochemical analysis of the Rv0805 cyclic nucleotide phosphodiesterase from Mycobacterium tuberculosis. J. mol. biol. 365, 1, 211-225.
4. ŽUPERL, Špela, PRISTOVŠEK, Primož, MENART, Viktor, GABERC-POREKAR, Vladka, NOVIČ, Marjana (2007) Chemometric approach in quantification of structural identity/similarity of proteins in biopharmaceuticals. J. chem. inf. mod. 47, 3, 737-743.

• BERGANT, Damijan, HOČEVAR, Marko, BEŠIĆ, Nikola, GLAVAČ, Damjan, KOROŠEC, Branka, CASERMAN, Simon (2006) Hereditary medullary thyroid cancer in Slovenia - genotype-phenotype correlations. Wien. Klin. Wochenschr. 118, 13/14, 411-416.
• CASERMAN, Simon, KENIG, Saša, SLOANE, Bonnie F., LAH TURNŠEK, Tamara (2006) Cathepsin L splice variants in human breast cell lines. Biol Chem 387, 629-634.
  KENIG, Maja, PETERNEL, Špela, GABERC-POREKAR, Vladka, MENART, Viktor (2006) Influence of the protein oligomericity on final yield after affinity tag removal in purification of recombinant proteins. J. Chromatogr., A, A1101, 1/2, 293-306.
• NOVAK ŠTAGOJ, Mateja, COMINO, Aleksandra, KOMEL, Radovan (2006) A novel GAL recombinant yeast strain for enhanced protein production. Biomolecular Engineering 23, 4, 195-199.
• NOVAK ŠTAGOJ, Mateja, PODOBNIK, Marjetka (2006) Kvasovke - tovarne rekombinantnih proteinov. Farm. Vestn. 57, 4, 235-240.
• PETERKA, Matjaž, JARC, Marko, BANJAC, Marko, SMREKAR, Vida, BENČINA, Katja, MERHAR, Mojca, GABERC-POREKAR, Vladka, MENART, Viktor, ŠTRANCAR, Aleš, PODGORNIK, Aleš (2006) Characterisation of metal-chelate methacrylate monoliths. J. Chromatogr., A, 1109, 1, 80-85.NOVAK ŠTAGOJ, Mateja, COMINO, Aleksandra, KOMEL, Radovan (2005) Fluorescence based assay of GAL system in yeast Saccharomyces cerevisiae. FEMS Microbiol. Lett. 244, 1, 105-110.
• FONDA, Irena, PERNUŠ, Mojca, GABERC-POREKAR, Vladka, KENIG, Maja, ŠTALC, Anton, MEAGER, Anthony, MENART, Viktor (2005) Improvement of potential therapeutic value of tumor necrosis-[alpha] (TNF-[alpha]) by charge modulation in the tip region. Eur. Cytokine Netw. (Montrouge) 16, 1, 17-26.
• GABERC-POREKAR, Vladka, MENART, Viktor (2005) Potential for using histidine tags in purification of proteins at large scale. Chem. Eng. Technol. 28, 11, 1306-1314
• SHENOY, Avinash R., SREENATH, Nandini, PODOBNIK, Marjetka, KOVAČEVIČ, Miroslav, VISWESWARIAH, Sandhya S (2005) The Rv0805 gene from Mycobacterium tuberculosis encodes a 3',5'-cyclic nucleotide phosphodiesterase : biochemical and mutational analysis. Biochemistry (Easton) 44, 48, 15695-15704.
• JEVŠEVAR, Simona, GABERC-POREKAR, Vladka, FONDA, Irena, PODOBNIK, Barbara, GRDADOLNIK, Jože, MENART, Viktor (2005) Production of nonclassical inclusion bodies from which correctly folded protein can be extracted. Biotechnol. Prog. 21, 2, 632-639.
• BEDINA ZAVEC, Apolonija, LEŠNIK, Urška, KOMEL, Radovan, COMINO, Aleksandra (2004) The Saccharomyces cerevisiae gene ECM11 is a positive effector of meiosis. FEMS Microbiol. Lett. 241, 2, 193-199.
• CASERMAN, Simon, LAH TURNŠEK, Tamara (2004) Comparison of expression of cathepsins B and L and MMP2 in andothelial cells and in capillary sprouting in collagen gel. Int. J. Biol. Markers 19, 2, 120-129.
• LENASSI ZUPAN, Ana, TROBEC, Sonja, GABERC-POREKAR, Vladka, MENART, Viktor (2004) High expression of green fluorescent protein in Pichia pastoris leads to formation of fluorescent particles. J. Biotechnol. 109, 1/2, 115-122.
• NOVAK ŠTAGOJ, Mateja, KOMEL, Radovan, COMINO, Aleksandra (2004) Microtiter plate assay of yeast cell numbr using the fluorescent dye Calcofluor White M2R. BioTechniques 36, 3, 380-382.
• KRAŠEVEC, Nada, SVETINA, Monika, GABERC-POREKAR, Vladka, MENART, Viktor, KOMEL, Radovan (2003) In vivo and in vitro cleavage of glucoamylase-TNF[alpha] fusion protein secreted from Aspergillus niger. Food Technol. Biotechnol. 41, 4, 345-351.
• MENART, Viktor, JEVŠEVAR, Simona, VILAR, Mateja, TROBIŠ, Andreja, PAVKO, Aleksander (2003) Constitutive versus thermoinducible expression of heterologous proteins in Escherichia coli based on strong P[sub]R,P[sub]L promoters from phage lambda. Biotechnol. Bioeng. 83, 2, 181-190.
• FONDA, Irena, KENIG, Maja, GABERC-POREKAR, Vladka, PRISTOVŠEK, Primož, MENART, Viktor (2002) Attachment of histidine tags to recombinant tumor necrosis factor-alpha drastically changes its properties. The Scientific World Journal 2, 1312-1325.
• GABERC-POREKAR, Vladka, MENART, Viktor (2001) Perspectives of Immobilized Metal Affinity Chromatography, Special Issue on Affinity Chromatography. J. Biochem. Biophys. Methods  49, 1/3, 335-360.
• NOVAKOVIĆ, Srdjan, ČEGOVNIK, Urška, MENART, Viktor, GALVANI, Vesna, WRABER-HERZOG, Branka (2001) Construction of an expression cassette with hTNF- [alpha] gene for transient expression of the gene in mammalian cells. Anticancer Res. 21, 1A, 365-371.
• SVETINA, Monika, KRAŠEVEC, Nada, GABERC-POREKAR, Vladka, KOMEL, Radovan (2000) Expression of catalytic subunit of bovine enterokinase in the filamentous fungus Aspergillus niger. J. Biotechnol. 76, 245-251.